Skip to ContentSkip to Navigation
About us Practical matters How to find us dr. S. (Sebo) Withoff

Research interests

I investigate how someone's genetic background (DNA) and non-coding RNA molecules (micro-RNAs (miRNAs) and long non-coding RNAs (lncRNAs)) contribute to the chance of developing a complex genetic, immune-mediated disease such as Celiac disease, Inflammatory Bowel Disease (IBD), Non-alcoholic Steatohepatitis (NASH) and Multiple Sclerosis (MS).

I predominantly use patientmaterial and celllines as disease models, which I manipulate and investigate using the latest 'genomics technologies' like for example CRISPR/Cas9, SNP (single nucleotide polymorphism) arrays, single-cell RNA sequencing, single-cell ATACseq, and oLINK targeted proteomics.

Recently I focus on the development of organ-on-chip platforms. I reprogram patient-derived cells into induced pluriptent stem cells (iPSCs) which in turn I differentiate into intestinal barrier cells, immune cells, bloodvessel cells, or liver cells. The microfluidic intestine-on-chip or liver-on-chip systems that I develop are currently the most promising modelsystems for personalized medicine and pharmacogenetics  applications and research questions because the cells were originally obtained from patients meaning that the genetic background underlying the disease is present.

Publications

An iPSC-derived small intestine-on-chip with self-organizing epithelial, mesenchymal, and neural cells

Genetic mapping across autoimmune diseases reveals shared associations and mechanisms

Human organoids and organ-on-chips in coeliac disease research

Potential biomarkers for multiple sclerosis stage from targeted proteomics and microRNA sequencing

Standardizing designed and emergent quantitative features in microphysiological systems

iPSC-derived organ-on-a-chip models for personalized human genetics and pharmacogenomics studies

Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire

Gut mucosa dissociation protocols influence cell type proportions and single-cell gene expression levels

Single-Cell RNA Sequencing of Peripheral Blood Mononuclear Cells From Pediatric Coeliac Disease Patients Suggests Potential Pre-Seroconversion Markers

A Combined mRNA- and miRNA-Sequencing Approach Reveals miRNAs as Potential Regulators of the Small Intestinal Transcriptome in Celiac Disease

Read more

Press/media

An update on the intestine-on-chip and liver-on-chip programs at the UMCG

Glutenintolerantie onderzoeken met minidarmpjes

Darmen op een chip

Iris Jonkers and Sebo Withoff

Grootse plannen met piepkleine organen.

Read more