Publications
2024
Dsouza,
L., Li, X., Erić, V., Huijser, A., Jansen,
T. L. C., Holzwarth, A. R., Buda, F., Bryant, D. A., Bahri,
S., Gupta, K. B. S. S., Sevink, G. J. A., & de Groot, H. J. M.
(2024). An integrated approach towards extracting structural
characteristics of chlorosomes from a bchQ mutant of Chlorobaculum
tepidum. Physical Chemistry Chemical
Physics, 26(22), 15856-15867. https://doi.org/10.1039/d4cp00221k
Baiz,
C., Bredenbeck, J., Cho, M., Jansen, T., Krummel, A.,
& Roberts, S. (2024). Celebrating 25 years of 2D IR
spectroscopy. Journal of Chemical
Physics, 160(1), Article 010401. https://doi.org/10.1063/5.0190809
Zhong,
K., Nguyen, H. L., Do, T. N., Tan, H. S., Knoester,
J., & Jansen, T. L. C. (2024).
Coarse-Grained Approach to Simulate Signatures of Excitation
Energy Transfer in Two-Dimensional Electronic Spectroscopy of Large
Molecular Systems. Journal of Chemical Theory and
Computation, 20(14), 6111-6124. https://doi.org/10.1021/acs.jctc.4c00413
Soh,
J. H., Jansen, T. L. C., &
Palacino-González, E. (2024). Controlling the
nonadiabatic dynamics of the charge-transfer process with chirped
pulses: Insights from a double-pump time-resolved fluorescence
spectroscopy scheme. Journal of Chemical
Physics, 160(2), Article 024110. https://doi.org/10.1063/5.0177073
Paz
Neme, N., Jansen, T. L. C., &
Havenith, R. (2024). Cyclopentene ring effects in
cyanine dyes: A handle to fine-tune photophysical
properties. PCCP : Physical Chemistry Chemical
Physics, 26(7), Article 6235. https://doi.org/10.1039/d3cp05219b
Maity,
S., Daskalakis, V., Jansen, T. L. C., &
Kleinekathöfer, U. (2024). Electric Field Susceptibility
of Chlorophyll c Leads to Unexpected Excitation Dynamics in the
Major Light-Harvesting Complex of Diatoms. JOURNAL
OF PHYSICAL CHEMISTRY LETTERS, 15(9),
2499-2510. https://doi.org/10.1021/acs.jpclett.3c03241
Nguyen,
H. L., Do, T. N., Zhong, K., Akhtar, P., Jansen,
T. L. C., Knoester, J., Caffarri, S., Lambrev,
P., & Tan, H. S. (2024). Inter-subunit energy transfer
processes in a minimal plant photosystem II supercomplex.
Science Advances, 10(8), Article
eadh0911. https://doi.org/10.1126/sciadv.adh0911
Erić,
V., Li, X., Dsouza, L., Huijser, A., Holzwarth, A. R., Buda,
F., Sevink, G. J. A., de Groot, H. J. M., & Jansen, T. L.
C. (2024). Observation of Dark States in
Two-Dimensional Electronic Spectra of Chlorosomes.
Journal of Physical Chemistry B,
128(15), 3575–3584. https://doi.org/10.1021/acs.jpcb.4c00067
Carta,
A., Wittmann, B., Kreger, K., Schmidt, H.-W., Jansen, T. L.
C., & Hildner, R. (2024). Spatial
Correlations Drive Long-Range Transport and Trapping of Excitons in
Single H‑Aggregates: Experiment and Theory.
The Journal of Physical Chemistry Letters,
15, 2697-2707. https://doi.org/10.1021/acs.jpclett.3c03586
Thomassen,
A. B., Jansen, T. L. C., & Weidner, T. (2024).
The secondary structure of diatom silaffin peptide R5
determined by two-dimensional infrared spectroscopy.
Physical Chemistry Chemical Physics,
2024(26), 18538-18546. https://doi.org/10.1039/d4cp00970c
2023
Zhong,
K., Nguyen, H. L., Do, T. N., Tan, H. S., Knoester,
J., & Jansen, T. L. C. (2023). An
efficient time-domain implementation of the multichromophoric
Förster resonant energy transfer method.
Journal of Chemical Physics, 158(6),
1710–1722. https://doi.org/10.1063/5.0136652
Erić,
V., Li, X., Dsouza, L., Frehan, S. K., Huijser, A.,
Holzwarth, A. R., Buda, F., Sevink, G. J. A., de Groot, H. J.
M., & Jansen, T. L. C. (2023). Manifestation
of Hydrogen Bonding and Exciton Delocalization on the Absorption
and Two-Dimensional Electronic Spectra of Chlorosomes.
Journal of Physical Chemistry B,
127(5), 1097-1109. https://doi.org/10.1021/acs.jpcb.2c07143
Palacino-González,
E., & Jansen, T. L. C. (2023).
Modeling the Effect of Disorder in the Two-Dimensional
Electronic Spectroscopy of Poly-3-hexyltiophene in an Organic
Photovoltaic Blend: A Combined Quantum/Classical Approach.
Journal of Physical Chemistry C,
127(14), 6793-6801. https://doi.org/10.1021/acs.jpcc.3c01080
Frehan,
S. K., Dsouza, L., Li, X., Eríc, V.,
Jansen, T. L. C., Mul, G., Holzwarth, A. R., Buda, F.,
Sevink, G. J. A., de Groot, H. J. M., & Huijser, A. (2023).
Photon Energy-Dependent Ultrafast Exciton Transfer in
Chlorosomes of Chlorobium tepidum and the Role of Supramolecular
Dynamics. Journal of Physical Chemistry
B, 127(35), 7581-7589. https://doi.org/10.1021/acs.jpcb.3c05282
Van
Hengel, C. D. N., Van Adrichem, K. E., &
Jansen, T. L. C. (2023). Simulation of two-dimensional
infrared Raman spectroscopy with application to proteins.
Journal of Chemical Physics, 158(6),
Article 064106. https://doi.org/10.1063/5.0138958
Erić,
V., Castro, J. L., Li, X., Dsouza, L., Frehan, S. K.,
Huijser, A., Holzwarth, A. R., Buda, F., Sevink, G. J. A., de
Groot, H. J. M., & Jansen, T. L. C. (2023).
Ultrafast Anisotropy Decay Reveals Structure and Energy
Transfer in Supramolecular Aggregates. Journal of
Physical Chemistry B, 127(34), 7487-7496. https://doi.org/10.1021/acs.jpcb.3c04719
Manrho,
M., Krishnaswamy, S. R., Kriete,
B., Patmanidis, I., de Vries, A.
H., Marrink, S. J., Jansen, T. L.
C., Knoester, J., & Pshenichnikov, M.
S. (2023). Watching Molecular Nanotubes Self-Assemble
in Real Time. Journal of the American Chemical
Society, 145(41), 22494–22503. https://doi.org/10.1021/jacs.3c07103
2022
Adrichem,
K. E. V., & Jansen, T. L. C. (2022).
AIM: A Mapping Program for Infrared Spectroscopy of
Proteins. Journal of Chemical Theory and
Computation, 18(5), 3089–3098. https://doi.org/10.1021/acs.jctc.2c00113
Saxena,
V., Steendam, R., & Jansen, T. L. C. (2022).
Distinguishing islet amyloid polypeptide fibril structures
with infrared isotope-label spectroscopy. The
Journal of Chemical Physics, 156(5), Article
055101. https://doi.org/10.1063/5.0082322
Manrho,
M., Jansen, T. L. C., & Knoester,
J. (2022). Optical signatures of the coupling between
excitons and charge transfer states in linear molecular
aggregates. Journal of Chemical
Physics, 156(22), Article 224112. https://doi.org/10.1063/5.0095470
Bernhardt,
R., Manrho, M., Zablocki, J., Rieland, L.,
Lützen, A., Schiek, M., Meerholz, K., Zhu, J., Jansen,
T. L. C., Knoester, J., & Van Loosdrecht,
P. H. M. (2022). Structural Disorder as the Origin of Optical
Properties and Spectral Dynamics in Squaraine
Nano-Aggregates. Journal of the American Chemical
Society, 144(42), 19372–19381. https://doi.org/10.1021/jacs.2c07064
Gallop,
N. P., Ye, J., Greetham, G. M., Jansen, T. L. C., Dai,
L., Zelewski, S. J., Arul, R., Baumberg, J. J., Hoye, R. L. Z.,
& Bakulin, A. A. (2022). The effect of caesium alloying
on the ultrafast structural dynamics of hybrid organic-inorganic
halide perovskites. Journal of Materials Chemistry
A, 10(42), 22408-22418. https://doi.org/10.1039/d2ta05207e
Nhut,
T., Nguyen, H. L., Akhtar, P., Zhong, K.,
Jansen, T. L. C., Knoester, J., Caffarri, S.,
Lambrev, P. H., & Tan, H.-S. (2022). Ultrafast Excitation
Energy Transfer Dynamics in the LHCII–CP29–CP24
Subdomain of Plant Photosystem II. The Journal of
Physical Chemistry Letters, 13(19),
4263–4271. https://doi.org/10.1021/acs.jpclett.2c00194
2021
Nguyen,
H. L., Do, T. N., Akhtar, P., Jansen, T. L.
C., Knoester, J., Wang, W., Shen, J.-R.,
Lambrev, P. H., & Tan, H.-S. (2021). An Exciton Dynamics
Model of Bryopsis corticulans Light-Harvesting Complex II.
Journal of Physical Chemistry B,
125(4), 1134-1143. https://doi.org/10.1021/acs.jpcb.0c10634
Jansen,
T. L. C. (2021). Computational spectroscopy of complex
systems. Journal of Chemical Physics,
155(17), Article 170901. https://doi.org/10.1063/5.0064092
El
Khoury, Y., Le Breton, G., Cunha, A. V., Jansen, T. L.
C., van Wilderen, L. J. G. W., & Bredenbeck, J. (2021).
Lessons from combined experimental and theoretical
examination of the FTIR and 2D-IR spectroelectrochemistry of the
amide I region of cytochrome c. Journal of
Chemical Physics, 154(12), Article 124201. https://doi.org/10.1063/5.0039969
Kunsel,
T., Günther, L. M., Köhler, J., Jansen, T.
L. C., & Knoester, J. (2021). Probing
size variations of molecular aggregates inside chlorosomes using
single-object spectroscopy. Journal of Chemical
Physics, 155(12), Article 124310. https://doi.org/10.1063/5.0061529
Majumdar,
A., & Jansen, T. L. C. (2021).
Quantum-Classical Simulation of Molecular Motors Driven Only
by Light. JOURNAL OF PHYSICAL CHEMISTRY
LETTERS, 12(23), 5512-5518. https://doi.org/10.1021/acs.jpclett.1c00951
Kunsel,
T., Jansen, T. L. C., & Knoester,
J. (2021). Scaling relations of exciton diffusion in
linear aggregates with static and dynamic disorder.
Journal of Chemical Physics,
155(13), Article 134305. https://doi.org/10.1063/5.0065206
2020
Bondarenko,
A. S., Knoester, J., & Jansen, T. L.
C. (2020). Comparison of methods to study excitation
energy transfer in molecular multichromophoric systems.
Chemical Physics, 529, Article
110478. https://doi.org/10.1016/j.chemphys.2019.110478
Raul,
B. A. L., Luponosov, Y. N., Yang, W., Surin, N. M.,
Douheret, O., Min, J., Jansen, T. L. C., Ponomarenko,
S. A., & Pshenichnikov, M. S. (2020).
Excited state dynamics and exciton diffusion in
triphenylamine/dicyanovinyl push-pull small molecule for organic
optoelectronics. Scientific Reports,
10(1), Article 21198. https://doi.org/10.1038/s41598-020-78197-2
Bondarenko,
A. S., Jansen, T. L. C., & Knoester,
J. (2020). Exciton localization in tubular molecular
aggregates: Size effects and optical response.
Journal of Chemical Physics,
152(19), Article 194302. https://doi.org/10.1063/5.0008688
Kriete,
B., Bondarenko, A. S., Alessandri, R., Patmanidis,
I., Krasnikov, V. V., Jansen, T. L. C.,
Marrink, S. J., Knoester, J., &
Pshenichnikov, M. S. (2020). Molecular versus
excitonic disorder in individual artificial light-harvesting
systems. Journal of the American Chemical
Society, 142(42), 18073-18085. Article
jacs.0c07392. https://doi.org/10.1021/jacs.0c07392
Bondarenko,
A. S., Patmanidis, I., Alessandri, R., Souza, P.
C. T., Jansen, T. L. C., de Vries, A.
H., Marrink, S. J., & Knoester,
J. (2020). Multiscale modeling of molecular structure
and optical properties of complex supramolecular aggregates.
Chemical Science, 11(42),
11514-11524. https://doi.org/10.1039/d0sc03110k
Sardjan,
A. S., Westerman, F. P., Ogilvie, J. P., & Jansen,
T. L. C. (2020). Observation of Ultrafast Coherence
Transfer and Degenerate States with Polarization-Controlled
Two-Dimensional Electronic Spectroscopy. Journal
of Physical Chemistry B, 124(42), 9420-9427.
https://doi.org/10.1021/acs.jpcb.0c08126
Cao,
J., Cogdell, R. J., Coker, D. F., Duan, H.-G., Hauer, J.,
Kleinekathoefer, U., Jansen, T. L. C., Mancal, T.,
Miller, R. J. D., Ogilvie, J. P., Prokhorenko, V., Renger, T., Tan,
H.-S., Tempelaar, R., Thorwart, M., Thyrhaug, E., Westenhoff, S.,
& Zigmantas, D. (2020). Quantum biology revisited.
Science Advances, 6(14), Article
eaaz4888. https://doi.org/10.1126/sciadv.aaz4888
Kunsel,
T., Loehner, A., Mayo, J. J., Koehler, J., Jansen, T.
L. C., & Knoester, J. (2020).
Unraveling intra-aggregate structural disorder using
single-molecule spectroscopy. Journal of Chemical
Physics, 153(13), Article 134304. https://doi.org/10.1063/5.0023551
Baiz,
C. R., Blasiak, B., Bredenbeck, J., Cho, M., Choi, J.-H., Corcelli,
S. A., Dijkstra, A. G., Feng, C.-J., Garrett-Roe, S., Ge, N.-H.,
Hanson-Heine, M. W. D., Hirst, J. D., Jansen, T. L.
C., Kwac, K., Kubarych, K. J., Londergan, C. H., Maekawa,
H., Reppert, M., Saito, S., ... Zanni, M. T. (2020).
Vibrational Spectroscopic Map, Vibrational Spectroscopy, and
Intermolecular Interaction. Chemical
reviews, 120(15), 7152-7218. https://doi.org/10.1021/acs.chemrev.9b00813
2019
Kriete,
B., Luettig, J., Kunsel, T., Maly, P.,
Jansen, T. L. C., Knoester, J., Brixner,
T., & Pshenichnikov, M. S. (2019). Interplay
between structural hierarchy and exciton diffusion in artificial
light harvesting. Nature
Communications, 10, Article 4615. https://doi.org/10.1038/s41467-019-12345-9
Kunsel,
T., Tiwari, V., Matutes, Y. A., Gardiner, A. T., Cogdell, R.
J., Ogilvie, J. P., & Jansen, T. L. C. (2019).
Simulating Fluorescence-Detected Two-Dimensional Electronic
Spectroscopy of Multichromophoric Systems. Journal
of Physical Chemistry B, 123(2), 394-406. https://doi.org/10.1021/acs.jpcb.8b10176
Loehner,
A., Kunsel, T., Roehr, M. I. S., Jansen, T. L.
C., Sengupta, S., Wuerthner, F., Knoester, J.,
& Koehler, J. (2019). Spectral and Structural Variations
of Biomimetic Light-Harvesting Nanotubes. JOURNAL
OF PHYSICAL CHEMISTRY LETTERS, 10(11),
2715-2724. https://doi.org/10.1021/acs.jpclett.9b00303
Jansen,
T. L. C., Saito, S., Jeon, J., & Cho, M. (2019).
Theory of coherent two-dimensional vibrational
spectroscopy. Journal of Chemical
Physics, 150(10), Article 100901. https://doi.org/10.1063/1.5083966
Zhang,
Q., Solanki, A., Parida, K., Giovanni, D., Li, M., Jansen, T.
L. C., Pshenichnikov, M. S., & Sum, T. C.
(2019). Tunable Ferroelectricity in Ruddlesden-Popper Halide
Perovskites. ACS Applied Materials &
Interfaces, 11(14), 13523-13532. https://doi.org/10.1021/acsami.8b21579
Jansen,
T. L. C. (2019). Unraveling Molecular Packing in
Two-Dimensional Excitonic Systems.
Chem, 5(12), 3010-3012. https://doi.org/10.1016/j.chempr.2019.11.011
2018
Kopec,
W., Koepfer, D. A., Vickery, O. N., Bondarenko, A. S.,
Jansen, T. L. C., de Groot, B. L., & Zachariae, U.
(2018). Direct knock-on of desolvated ions governs strict ion
selectivity in K+ channels. Nature
Chemistry, 10(8), 813-820. https://doi.org/10.1038/s41557-018-0105-9
Salamatova,
E., Cunha, A. V., Bloem, R., Roeters, S. J., Woutersen, S.,
Jansen, T. L. C., & Pshenichnikov, M. S.
(2018). Hydrophobic Collapse in N-Methylacetamide Water
Mixtures. The Journal of Physical Chemistry. A:
Molecules, Spectroscopy, Kinetics, Environment, & General
Theory, 122(9), 2468-2478. https://doi.org/10.1021/acs.jpca.8b00276
Thyrhaug,
E., Tempelaar, R., Alcocer, M. J. P., Zidek, K., Bina, D.,
Knoester, J., Jansen, T. L. C., &
Zigmantas, D. (2018). Identification and characterization of
diverse coherences in the Fenna-Matthews-Olson complex.
Nature Chemistry, 10(7), 780-786. https://doi.org/10.1038/s41557-018-0060-5
Gallop,
N. P., Selig, O., Giubertoni, G., Bakker, H. J., Rezus, Y. L. A.,
Frost, J. M., Jansen, T. L. C., Lovrincic, R., &
Bakulin, A. A. (2018). Rotational Cation Dynamics in Metal
Halide Perovskites: Effect on Phonons and Material
Properties. JOURNAL OF PHYSICAL CHEMISTRY
LETTERS, 9(20), 5987-5997. https://doi.org/10.1021/acs.jpclett.8b02227
Jansen,
T. L. C. (2018). Simple Quantum Dynamics with
Thermalization. The Journal of Physical Chemistry.
A: Molecules, Spectroscopy, Kinetics, Environment, & General
Theory, 122(1), 172-183. https://doi.org/10.1021/acs.jpca.7b10380
Bari,
S., Egorov, D., Jansen, T. L. C., Boll,
R., Hoekstra, R., Techert, S., Zamudio-bayer, V.,
Bülow, C., Lindblad, R., Leistner, G., Ławicki, A.,
Hirsch, K., Miedema, P. S., Von Issendorf, B., Lau, T., &
Schlathölter, T. (2018). Soft X-ray spectroscopy
as a probe for gas-phase protein structure: Electron impact
ionization from within. Chemistry,
24(30), 7631-7636. https://doi.org/10.1002/chem.201801440
Tiwari,
V., Matutes, Y. A., Gardiner, A. T., Jansen, T. L. C.,
Cogdell, R. J., & Ogilvie, J. P. (2018).
Spatially-resolved fluorescence-detected two-dimensional
electronic spectroscopy probes varying excitonic structure in
photosynthetic bacteria. Nature
Communications, 9, Article 4219. https://doi.org/10.1038/s41467-018-06619-x
Guenther,
L. M., Loehner, A., Reiher, C., Kunsel, T.,
Jansen, T. L. C., Tank, M., Bryant, D. A., Knoester,
J., & Koehler, J. (2018). Structural Variations in
Chlorosomes from Wild-Type and a bchQR Mutant of Chlorobaculum
tepidum Revealed by Single-Molecule Spectroscopy.
Journal of Physical Chemistry B,
122(26), 6712-6723. https://doi.org/10.1021/acs.jpcb.8b02875
Selig,
O., Cunha, A. V., van Eldijk, M. B., van Hest, J. C. M.,
Jansen, T. L. C., Bakker, H. J., & Rezus, Y. L. A.
(2018). Temperature-Induced Collapse of Elastin-like Peptides
Studied by 2DIR Spectroscopy. Journal of Physical
Chemistry B, 122(34), 8243-8254. https://doi.org/10.1021/acs.jpcb.8b05221
Farag,
M. H., Jansen, T. L. C., & Knoester,
J. (2018). The origin of absorptive features in the
two-dimensional electronic spectra of rhodopsin.
PPCP : Physical Chemistry Chemical Physics,
20(18), 12746-12754. https://doi.org/10.1039/c8cp00638e
2017
Tran,
H., Cunha, A. V., Shephard, J. J., Shalit, A., Hamm, P.,
Jansen, T. L. C., & Salzmann, C. G. (2017). 2D IR
spectroscopy of high-pressure phases of ice.
Journal of Chemical Physics,
147(14), Article 144501 - 144511. https://doi.org/10.1063/1.4993952
Tempelaar,
R., Jansen, T. L. C., & Knoester, J.
(2017). Exciton-Exciton Annihilation Is Coherently Suppressed
in H-Aggregates, but Not in J-Aggregates. The
Journal of Physical Chemistry Letters, 8(24),
6113-6117. https://doi.org/10.1021/acs.jpclett.7b02745,
https://doi.org/10.48550/arxiv.1705.05861
Salamatova,
E., Cunha, A. V., Shinokita, K., Jansen, T. L.
C., & Pshenichnikov, M. S. (2017).
Hydrogen bond and lifetime dynamics in diluted
alcohols. PPCP : Physical Chemistry Chemical
Physics, 19(41), 27960-27967. https://doi.org/10.1039/c7cp03222f
Cunha,
A. V., Salamatova, E., Bloem, R., Roeters, S. J., Woutersen,
S., Pshenichnikov, M. S., & Jansen, T. L.
C. (2017). Interplay between Hydrogen Bonding and
Vibrational Coupling in Liquid N-Methylacetamide.
The Journal of Physical Chemistry Letters,
8(11), 2438-2444. https://doi.org/10.1021/acs.jpclett.7b00731
Selig,
O., Sadhanala, A., Muller, C., Lovrincic, R., Chen, Z., Rezus, Y.
L. A., Frost, J. M., Jansen, T. L. C., & Bakulin,
A. A. (2017). Organic Cation Rotation and Immobilization in
Pure and Mixed Methylammonium Lead-Halide Perovskites.
Journal of the American Chemical Society,
139(11), 4068-4074. https://doi.org/10.1021/jacs.6b12239
Farag,
M. H., Hoenders, B. J., Knoester, J., &
Jansen, T. L. C. (2017). Spectral line shapes in
linear absorption and two-dimensional spectroscopy with skewed
frequency distributions. Journal of Chemical
Physics, 146(23), Article 234201. https://doi.org/10.1063/1.4985665
Kriete,
B., Bondarenko, A. S., Jumde, V. R., Franken, L. E.,
Minnaard, A. J., Jansen, T. L. C.,
Knoester, J., & Pshenichnikov, M. S.
(2017). Steering Self-Assembly of Amphiphilic Molecular
Nanostructures via Halogen Exchange. The Journal
of Physical Chemistry Letters, 8(13),
2895-2901. https://doi.org/10.1021/acs.jpclett.7b00967
Frederix,
P. W. J. M., Idé, J., Altay, Y., Schaeffer,
G., Surin, M., Beljonne, D., Bondarenko, A. S.,
Jansen, T. L. C., Otto, S., &
Marrink, S. J. (2017). Structural and Spectroscopic
Properties of Assemblies of Self-Replicating Peptide
Macrocycles. Acs Nano, 11(8),
7858-7868. https://doi.org/10.1021/acsnano.7b02211
Johnson,
P. J. M., Farag, M. H., Halpin, A., Morizumi, T., Prokhorenko, V.
I., Knoester, J., Jansen, T. L. C.,
Ernst, O. P., & Miller, R. J. D. (2017). The Primary
Photochemistry of Vision Occurs at the Molecular Speed
Limit. The Journal of Physical Chemistry. B:
Materials, Surfaces, Interfaces, & Biophysical,
121(16), 4040-4047. https://doi.org/10.1021/acs.jpcb.7b02329
2016
Cunha,
A. V., Bondarenko, A. S., & Jansen, T. L. C.
(2016). Assessing Spectral Simulation Protocols for the Amide
I Band of Proteins. Journal of Chemical Theory and
Computation, 12(8), 3982-3992. https://doi.org/10.1021/acs.jctc.6b00420
Tempelaar,
R., Koster, J. A., Havenith, R.,
Knoester, J., & Jansen, T. (2016).
Charge recombination suppressed by destructive quantum
interference in heterojunction materials.
Abstracts of Papers of the American Chemical
Society, 252.
Tempelaar,
R., Koster, L. J. A., Havenith, R. W.
A., Knoester, J., & Jansen, T. L.
C. (2016). Charge Recombination Suppressed by
Destructive Quantum Interference in Heterojunction
Materials. The Journal of Physical Chemistry
Letters, 7(1), 198-203. https://doi.org/10.1021/acs.jpclett.5b02580
Tempelaar,
R., Koster, L. J. A., Havenith, R. W.
A., Knoester, J., & Jansen, T. L.
C. (2016). Correction to “Charge Recombination
Suppressed by Destructive Quantum Interference in Heterojunction
Materials”. The Journal of Physical
Chemistry Letters, 7(18), 3659-3659. https://doi.org/10.1021/acs.jpclett.6b01956
Tempelaar,
R., Halpin, A., Johnson, P. J. M., Cai, J., Murphy, R. S.,
Knoester, J., Miller, R. J. D., & Jansen, T. L.
C. (2016). Laser-Limited Signatures of Quantum
Coherence. The Journal of Physical Chemistry. A:
Molecules, Spectroscopy, Kinetics, Environment, & General
Theory, 120(19), 3042-3048. https://doi.org/10.1021/acs.jpca.5b10312
Farag,
M. H., Jansen, T. L. C., & Knoester,
J. (2016). Probing the Interstate Coupling near a
Conical Intersection by Optical Spectroscopy. The
Journal of Physical Chemistry Letters, 7(17),
3328-3334. https://doi.org/10.1021/acs.jpclett.6b01463
Shi,
L., Skinner, J. L., & Jansen, T. L. C. (2016).
Two-dimensional infrared spectroscopy of neat ice I-h.
PPCP : Physical Chemistry Chemical Physics,
18(5), 3772-3779. https://doi.org/10.1039/c5cp07264f
2015
Bondarenko,
A. S., & Jansen, T. L. C. (2015).
Application of two-dimensional infrared spectroscopy to
benchmark models for the amide I band of proteins.
Journal of Chemical Physics,
142(21), Article 212437. https://doi.org/10.1063/1.4919716
van
der Vegte, N., Prajapati, J., Kleinekathoefer, U., Knoester,
J., & Jansen, T. (2015). Atomistic
Modeling of Two-Dimensional Electronic Spectra and Excited State
Dynamics for a Light Harvesting 2 Complex. The
Journal of Physical Chemistry B, 119(4),
1302–1313. https://doi.org/10.1021/jp509247p
Hestand,
N. J., Tempelaar, R., Knoester, J., Jansen, T.
L. C., & Spano, F. C. (2015). Exciton mobility
control through sub − Å packing modifications in
molecular crystals. Physical Review. B: Condensed
Matter and Materials Physics, 91(19), Article
195315. https://doi.org/10.1103/PhysRevB.91.195315
Shinokita,
K., Cunha, A. V., Jansen, T. L. C., &
Pshenichnikov, M. S. (2015). Hydrogen bond dynamics in
alcohols studied by 2D IR spectroscopy. In Ultrafast
Phenomena XIX - Proceedings of the 19th International
Conference (Vol. 162, pp. 466-470). (Springer Proceedings in
Physics; Vol. 462). Springer Science and Business Media, LLC. https://doi.org/10.1007/978-3-319-13242-6_114
Shinokita,
K., Cunha, A. V., Jansen, T. L. C., &
Pshenichnikov, M. S. (2015). Hydrogen bond dynamics in
bulk alcohols. Journal of Chemical
Physics, 142(21), Article 212450. https://doi.org/10.1063/1.4921574
Bakulin,
A. A., Selig, O., Bakker, H. J., Rezus, Y. L. A., Mueller, C.,
Glaser, T., Lovrincic, R., Sun, Z., Chen, Z., Walsh, A., Frost, J.
M., & Jansen, T. L. C. (2015). Real-Time
Observation of Organic Cation Reorientation in Methylammonium Lead
Iodide Perovskites. The Journal of Physical
Chemistry Letters, 6(18), 3663-3669. https://doi.org/10.1021/acs.jpclett.5b01555
Kruiger,
J. F., van der Vegte, C. P., & Jansen, T. (2015).
Suppressing sampling noise in linear and two-dimensional
spectral simulations. Journal of Chemical
Physics, 142(5), Article 054201. https://doi.org/10.1063/1.4907277
2014
Jansen,
T. L. C. (2014). Linear Absorption and Two-Dimensional
Infrared Spectra of N-Methylacetamide in Chloroform Revisited:
Polarizability and Multipole Effects. The Journal
of Physical Chemistry B, 118(28), 8162-8169.
https://doi.org/10.1021/jp5012445
Tempelaar,
R., Spano, F. C., Knoester, J., & Jansen, T.
L. C. (2014). Mapping the Evolution of Spatial Exciton
Coherence through Time-Resolved Fluorescence. The
Journal of Physical Chemistry Letters, 5(9),
1505-1510. https://doi.org/10.1021/jz500488u
van
der Vegte, C. P., Knop, S., Voehringer, P., Knoester,
J., & Jansen, T. L. C. (2014).
OH-Stretching in Synthetic Hydrogen-Bonded Chains.
The Journal of Physical Chemistry B,
118(23), 6256-6264. https://doi.org/10.1021/jp504267h
Halpin,
A., Johnson, P. J. M., Tempelaar, R., Murphy, R. S.,
Knoester, J., Jansen, T. L. C., & Miller,
R. J. D. (2014). Two-dimensional spectroscopy of a molecular
dimer unveils the effects of vibronic coupling on exciton
coherences. Nature Chemistry,
6(3), 196-201. https://doi.org/10.1038/NCHEM.1834
Tempelaar,
R., Jansen, T. L. C., & Knoester, J.
(2014). Vibrational Beatings Conceal Evidence of Electronic
Coherence in the FMO Light-Harvesting Complex. The
Journal of Physical Chemistry B, 118(45),
12865-12872. https://doi.org/10.1021/jp510074q
2013
van
der Vegte, C. P., Dijkstra, A. G., Knoester, J.,
& Jansen, T. L. C. (2013). Calculating
Two-Dimensional Spectra with the Mixed Quantum-Classical Ehrenfest
Method. The Journal of Physical Chemistry
A, 117(29), 5970-5980. https://doi.org/10.1021/jp311668r
Bakulin,
A. A., Cringus, D., Pieniazek, P. A., Skinner, J. L., Jansen,
T. L. C., & Pshenichnikov, M. S. (2013).
Dynamics of Water Confined in Reversed Micelles:
Multidimensional Vibrational Spectroscopy Study.
Journal of Physical Chemistry B,
117(49), 15545-15558. https://doi.org/10.1021/jp405853j
Liang,
C., & Jansen, T. L. C. (2013). Simulation of
Two-Dimensional Sum-Frequency Generation Response Functions:
Application to Amide I in Proteins. Journal of
Physical Chemistry B, 117(23), 6937-6945. https://doi.org/10.1021/jp403111j
Tempelaar,
R., van der Vegte, C. P., Knoester, J., &
Jansen, T. L. C. (2013). Surface hopping modeling of
two-dimensional spectra. Journal of Chemical
Physics, 138(16), 164106-1-164106-10. Article
164106. https://doi.org/10.1063/1.4801519
Liang,
C., Louhivuori, M., Marrink, S. J., Jansen, T.
L. C., & Knoester, J. (2013).
Vibrational Spectra of a Mechanosensitive Channel.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS,
4(3), 448-452. https://doi.org/10.1021/jz3019258
2012
Liang,
C., & Jansen, T. L. C. (2012). An Efficient
N-3-Scaling Propagation Scheme for Simulating Two-Dimensional
Infrared and Visible Spectra. Journal of Chemical
Theory and Computation, 8(5), 1706-1713. https://doi.org/10.1021/ct300045c
Jansen,
T. L. C., Dijkstra, A. G., Watson, T. M., Hirst, J.
D., & Knoester, J. (2012). Erratum:
“Modeling the amide I bands of small peptides” [J.
Chem. Phys. 125, 044312 (2006)]. Journal of
Chemical Physics, 136(20), Article 209901. https://doi.org/10.1063/1.4722584
Lessing,
J., Roy, S., Reppert, M., Baer, M., Marx, D., Jansen, T. L.
C., Knoester, J., & Tokmakoff, A. (2012).
Identifying Residual Structure in Intrinsically Disordered
Systems: A 2D IR Spectroscopic Study of the GVGXPGVG
Peptide. Journal of the American Chemical
Society, 134(11), 5032-5035. https://doi.org/10.1021/ja2114135
Liang,
C., Knoester, J., & Jansen, T. L. C.
(2012). Proton Transport in a Membrane Protein Channel:
Two-Dimensional Infrared Spectrum Modeling.
Journal of Physical Chemistry B,
116(22), 6336-6345. https://doi.org/10.1021/jp3019827
2011
Roy,
S., Pshenichnikov, M. S., & Jansen, T. L.
C. (2011). Analysis of 2D CS Spectra for Systems with
Non-Gaussian Dynamics. Journal of Physical
Chemistry B, 115(18), 5431-5440. https://doi.org/10.1021/jp109742p
Olbrich,
C., Jansen, T. L. C., Liebers, J., Aghtar, M.,
Struempfer, J., Schulten, K., Knoester, J.,
Kleinekathoefer, U., & Strümpfer, J. (2011). From
Atomistic Modeling to Excitation Transfer and Two-Dimensional
Spectra of the FMO Light-Harvesting Complex.
Journal of Physical Chemistry B,
115(26), 8609-8621. https://doi.org/10.1021/jp202619a
Dijkstra,
A. G., Jansen, T. L. C., & Knoester,
J. (2011). Modeling the Vibrational Dynamics and
Nonlinear Infrared Spectra of Coupled Amide I and II Modes in
Peptides. Journal of Physical Chemistry
B, 115(18), 5392-5401. https://doi.org/10.1021/jp109431a
Knop,
S., Jansen, T. L. C., Lindner, J., & Voehringer,
P. (2011). On the nature of OH-stretching vibrations in
hydrogen-bonded chains: Pump frequency dependent vibrational
lifetime. Physical Chemistry Chemical
Physics, 13(10), 4641-4650. https://doi.org/10.1039/c0cp02143a
Liang,
C., & Jansen, T. L. C. (2011). Proton
transport in a binary biomimetic solution revealed by molecular
dynamics simulation. Journal of Chemical
Physics, 135(11), Article 114502. https://doi.org/10.1063/1.3636381
Liang,
C., Jansen, T. L. C., & Knoester, J.
(2011). Proton transport in biological systems can be probed
by two-dimensional infrared spectroscopy. Journal
of Chemical Physics, 134(4),
044502-1-044502-8. Article 044502. https://doi.org/10.1063/1.3522770
Roy,
S., Lessing, J., Meisl, G., Ganim, Z., Tokmakoff, A.,
Knoester, J., & Jansen, T. L. C. (2011).
Solvent and conformation dependence of amide I vibrations in
peptides and proteins containing proline. Journal
of Chemical Physics, 135(23),
234507-1-234507-11. Article 234507. https://doi.org/10.1063/1.3665417
2010
Smith,
A. W., Lessing, J., Ganim, Z., Peng, C. S., Tokmakoff, A., Roy,
S., Jansen, T. L. C., & Knoester, J.
(2010). Melting of a beta-Hairpin Peptide Using
Isotope-Edited 2D IR Spectroscopy and Simulations.
Journal of Physical Chemistry B,
114(34), 10913-10924. https://doi.org/10.1021/jp104017h
Roy,
S., Jansen, T. L. C., & Knoester, J.
(2010). Structural classification of the amide I sites of a
beta-hairpin with isotope label 2DIR spectroscopy.
Physical Chemistry Chemical Physics,
12(32), 9347-9357. https://doi.org/10.1039/b925645h
Last modified: | 09 June 2023 8.36 p.m. |