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Research Zernike (ZIAM) Micromechanics Van der Giessen Group

Publications

2024

Jafarinia, H., van der Giessen, E., & Onck, P. R. (2024). C9orf72 polyPR directly binds to various nuclear transport components. eLife, 12, Article RP89694. https://doi.org/10.7554/eLife.89694
Jafarinia, H., Van der Giessen, E., & Onck, P. R. (2024). C9orf72 polyPR interaction with the nuclear pore complex. Biophysical Journal, 123(20), 3533-3539. https://doi.org/10.1016/j.bpj.2024.08.024
Zhang, L., Csányi, G., van der Giessen, E., & Maresca, F. (2024). Efficiency, accuracy, and transferability of machine learning potentials: Application to dislocations and cracks in iron. Acta Materialia, 270, Article 119788. https://doi.org/10.1016/j.actamat.2024.119788
Maresca, F., & van der Giessen, E. (2024). Present and future of atomistic simulations of dislocation plasticity. KIM REVIEW, 2(04). https://doi.org/10.25950/d63d27b5

2023

Shakibi, S., Onck, P. R., & Van der Giessen, E. (2023). A One-Bead-Per-Saccharide (1BPS) Model for Glycosaminoglycans. Journal of Chemical Theory and Computation, 19(16), 5491–5502. https://doi.org/10.1021/acs.jctc.3c00238
Zhang, L., Csányi, G., van der Giessen, E., & Maresca, F. (2023). Atomistic fracture in bcc iron revealed by active learning of Gaussian approximation potential. Npj computational materials, 9(1), Article 217. https://doi.org/10.1038/s41524-023-01174-6
Zhang, L., Csanyi, G., van der Giessen, E., & Maresca, F. (2023). Efficient, Accurate, and Transferable Machine Learning Potentials: Application to Dislocations and Cracks in Iron. arXiv. https://doi.org/10.48550/arXiv.2307.10072
Shakibi, S., Onck, P. R., Van, E., & van der Giessen, E. (2023). Extracellular proteoglycans: A multiscale computational study. Biophysical Journal, 122(3 Supplement 1), 420a-421a. https://doi.org/10.1016/j.bpj.2022.11.2279
Dekker, M., Van der Giessen, E., & Onck, P. R. (2023). Phase separation of intrinsically disordered FG-Nups is driven by highly dynamic FG motifs. Proceedings of the National Academy of Sciences of the United States of America, 120(25), Article e2221804120. https://doi.org/10.1073/pnas.2221804120

2022

van der Giessen, E., & Needleman, A. (2022). Dislocation Dynamics for Plasticity Boundary Value Problems. In Encyclopedia of Materials: Metals and Alloys (Vol. 4, pp. 541-551). Elsevier. https://doi.org/10.1016/B978-0-12-819726-4.00043-0
Jafarinia, H., Van der Giessen, E., & Onck, P. R. (2022). Molecular basis of C9orf72 poly-PR interference with the β-karyopherin family of nuclear transport receptors. Scientific Reports, 12(1), Article 21324. https://doi.org/10.1038/s41598-022-25732-y
Fragasso, A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van der Giessen, E., Onck, P. R., & Dekker, C. (2022). Transport receptor occupancy in nuclear pore complex mimics. Nano Research, 15(11), 9689–9703. https://doi.org/10.1007/s12274-022-4647-1

2021

van der Klok, M., Dekker, M., Van der Giessen, E., & Onck, P. R. (2021). A 4BPA Coarse-Grained Molecular Dynamics Study on the Aggregation of Polyglutamine. Biophysical Journal, 120(3 Suppl. 1), 28A-28A. https://doi.org/10.1016/j.bpj.2020.11.428
Fragasso, A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van der Giessen, E., Dahlin, A., Onck, P. R., & Dekker, C. (2021). A designer FG-Nup that reconstitutes the selective transport barrier of the nuclear pore complex. Nature Communications, 12(1), Article 2010. https://doi.org/10.1038/s41467-021-22293-y
Vulders, R. C. M., van Hoogenhuizen, R. C., van der Giessen, E., & van der Zaag, P. (2021). Clearing-induced tissue shrinkage: A novel observation of a thickness size effect. PLoS ONE, 16(12), Article e0261417. https://doi.org/10.1371/journal.pone.0261417
De Vries, H., Fragasso, A., Otto, T., Klughammer, N., Andersson, J., Sluis, E. V. D., Steen, A., Dahlin, A., Veenhoff, L., Dekker, C., Giessen, E. V. D., & Onck, P. (2021). De Novo Computational Design of Disordered Fg-Nucleoporins. Biophysical Journal, 120(3), 29a-30a. https://doi.org/10.1016/j.bpj.2020.11.435
Katiyar, T., & Van der Giessen, E. (2021). Effective mobility of BCC dislocations in two-dimensional discrete dislocation plasticity. Computational Materials Science, 187, Article 110129. https://doi.org/10.1016/j.commatsci.2020.110129
Jafarinia, H., Van der Giessen, E., & Onck, P. R. (2021). The Interaction between Poly-PR Dipeptide Repeat Proteins and the Nuclear Pore Complex. Biophysical Journal, 120(3), 285A-285A. https://doi.org/10.1016/j.bpj.2020.11.1829
Ponson, L., Shabir, Z., Abdulmajid, M., Van Der Giessen, E., & Simone, A. (2021). Unified scenario for the morphology of crack paths in two-dimensional disordered solids. Physical Review E, 104(5), Article 055003. https://doi.org/10.1103/PhysRevE.104.055003

2020

Fragasso, A., de Vries, H., van der Sluis, E., Van der Giessen, E., Onck, P. R., & Dekker, C. (2020). A Designer FG-Nup that Reconstitutes the Selective Transport Barrier of the Nuclear Pore Complex. Biophysical Journal, 118(3), 341A-342A. https://doi.org/10.1101/2020.02.04.933994
de Vries, H., Fragasso, A., van der Sluis, E. O., Dekker, C., Van der Giessen, E., & Onck, P. R. (2020). Coarse-Grained Modeling of Nuclear Pore Complex Mimics Comprising Designer FG-Nucleoporins. Biophysical Journal, 118(3), 342A-343A. https://doi.org/10.1016/j.bpj.2019.11.1906
Jafarinia, H., van der Giessen, E., & Onck, P. R. (2020). Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD. Biophysical Journal, 119(4), 843-851. https://doi.org/10.1016/j.bpj.2020.07.005
van der Giessen, E., Schultz, P., Bertin, N., Bulatov, V., Cai, W., Csanyi, G., Foiles, S., Geers, M., González, C., Hütter, M., Kim, W.-K., Kochmann, D., Llorca, J., Mattsson, A., Rottler, J., Shluger, A., Sills, R., Steinbach, I., Strachan, A., & Tadmor, E. (2020). Roadmap on multiscale materials modeling. Modelling and Simulation in Materials Science and Engineering, 28(4), Article 043001. https://doi.org/10.1088/1361-651X/ab7150

2019

Rempel, I. L., Crane, M. M., Thaller, D. J., Mishra, A., Jansen, D. P. M., Janssens, G., Popken, P., Akşit, A., Kaeberlein, M., van der Giessen, E., Steen, A., Onck, P. R., Lusk, C. P., & Veenhoff, L. M. (2019). Age-dependent deterioration of nuclear pore assembly in mitotic cells decreases transport dynamics. eLife, 8, Article e48186. https://doi.org/10.7554/eLife.48186
Song, H., Yavas , H., van der Giessen, E., & Papanikolaou, S. (2019). Discrete dislocation dynamics simulations of nanoindentation with pre-stress: Hardness and statistics of abrupt plastic events. Journal of the Mechanics and Physics of Solids, 123, 332-347. https://doi.org/10.1016/j.jmps.2018.09.005
van der Giessen, E. (2019). Micromechanics & emergence in time. European Journal of Mechanics A-Solids, 75, 277-283. https://doi.org/10.1016/j.euromechsol.2019.01.003
Shabir, Z., van der Giessen, E., Duarte, A., & Simone, A. (2019). On the applicability of linear elastic fracture mechanics scaling relations in the analysis of intergranular fracture of brittle polycrystals. Computational Mechanics, 220(2), 205-219. https://doi.org/10.1007/s10704-019-00381-x
Mishra, A., Sipma, W., Veenhoff, L. M., Van der Giessen, E., & Onck, P. R. (2019). The effect of FG-nup phosphorylation on NPC selectivity: A one-bead-per-amino-acid molecular dynamics study. International Journal of Molecular Sciences, 20(3), Article 596. https://doi.org/10.3390/ijms20030596

2018

Chen, J., Leung, F. K.-C., Stuart, M. C. A., Kajitani, T., Fukushima, T., van der Giessen, E., & Feringa, B. L. (2018). Artificial muscle-like function from hierarchical supramolecular assembly of photoresponsive molecular motors. Nature Chemistry, 10(2), 132-138. https://doi.org/10.1038/nchem.2887
Akhondzadeh, H., Sills, R., Papanikolaou, S., van der Giessen, E., & Cai, W. (2018). Geometrically projected discrete dislocation dynamics. Modelling and Simulation in Materials Science and Engineering, 26(6), Article 065011. https://doi.org/10.1088/1361-651X/aacf31
Boonstra, S., Blijleven, J. S., Roos, W. H., Onck, P. R., van der Giessen, E., & van Oijen, A. M. (2018). Hemagglutinin-Mediated Membrane Fusion: A Biophysical Perspective. Annual Review of Biophysics, 47. https://doi.org/10.1146/annurev-biophys-070317-033018
Ghavami, A., Van der Giessen, E., & Onck, P. R. (2018). Sol-gel transition in solutions of FG-Nups of the nuclear pore complex. Extreme Mechanics Letters, 22, 36-41. https://doi.org/10.1016/j.eml.2018.04.006
Ananth, A. N., Mishra, A., Frey, S., Dwarkasing, A., Versloot, R., van der Giessen, E., Görlich, D., Onck, P., & Dekker, C. (2018). Spatial structure of disordered proteins dictates conductance and selectivity in nuclear pore complex mimics. eLife, 7, Article 31510. https://doi.org/10.7554/eLife.31510

2017

Boonstra, S., Onck, P. R., & Van der Giessen, E. (2017). Computation of Hemagglutinin Free Energy Difference by the Confinement Method. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 121(50), 11292-11303. https://doi.org/10.1021/acs.jpcb.7b09699
Song, H., Vakis, A. I., Liu, X., & van der Giessen, E. (2017). From Discrete Dislocation Plasticity to a Statistical Model of Rough Surface Contact. Abstract from 2017 MRS Fall Meeting & Exhibit, Boston, United States.
Papanikolaou, S., Song, H., & van der Giessen, E. (2017). Obstacles and sources in dislocation dynamics: Strengthening and statistics of abrupt plastic events in nanopillar compression. Journal of the Mechanics and Physics of Solids, 102, 17-29. https://doi.org/10.1016/j.jmps.2017.02.004
Song, H., Vakis, A. I., Liu, X., & Van der Giessen, E. (2017). Statistical model of rough surface contact accounting for size-dependent plasticity and asperity interaction. Journal of the Mechanics and Physics of Solids, 106, 1-14. https://doi.org/10.1016/j.jmps.2017.05.014
Hu, J., Liu, Z., Van der Giessen, E., & Zhuang, Z. (2017). Strain rate effects on the plastic flow in submicron copper pillars: Considering the influence of sample size and dislocation nucleation. Extreme Mechanics Letters, 17, 33-37. https://doi.org/10.1016/j.eml.2017.09.011

2016

Boonstra, S., Onck, P. R., & van der Giessen, E. (2016). CHARMM TIP3P Water Model Suppresses Peptide Folding by Solvating the Unfolded State. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 120(15), 3692-3698. https://doi.org/10.1021/acs.jpcb.6b01316
Helbig, M., van der Giessen, E., Clausen, A. H., & Seelig, T. (2016). Continuum-micromechanical modeling of distributed crazing in rubber-toughened polymers. European Journal of Mechanics A-Solids, 57, 108-120. https://doi.org/10.1016/j.euromechsol.2015.11.007
Song, H., Deshpande, V. S., & van der Giessen, E. (2016). Discrete dislocation plasticity analysis of loading rate-dependent static friction. Proceedings of the Royal Society A, Mathematical Physical and Engineering Sciences, 472(2192), Article 20150877. https://doi.org/10.1098/rspa.2015.0877
Sun, F., van der Giessen, E., & Nicola, L. (2016). Dry frictional contact of metal asperities: A dislocation dynamics analysis. Acta Materialia, 109, 162-169. https://doi.org/10.1016/j.actamat.2016.02.033
Ghavami, A., van der Giessen, E., & Onck, P. R. (2016). Energetics of Transport through the Nuclear Pore Complex. PLoS ONE, 11(2), Article e0148876. https://doi.org/10.1371/journal.pone.0148876
Song, H., van der Giessen, E., & Vakis, A. I. (2016). Erratum: "Asperity Interaction and Substrate Deformation in Statistical Summation Models of Contact Between Rough Surfaces" [Journal of Applied Mechanics, 81(4), p. 041012]. Journal of Applied Mechanics-Transactions of the Asme, 83(8), 087001. https://doi.org/10.1115/1.4033534
Ghavami, A., Veenhoff, L. M., Van der Giessen, E., & Onck, P. R. (2016). Intrinsically Disordered Proteins: Gatekeepers of the Nuclear Pore Complex. Biophysical Journal, 110(3, suppl. 1), 358A-358A. https://doi.org/10.1016/j.bpj.2015.11.1930
Blijleven, J. S., Boonstra, S., Onck, P. R., van der Giessen, E., & van Oijen, A. M. (2016). Mechanisms of influenza viral membrane fusion. Seminars in Cell & Developmental Biology, 60, 78-88. https://doi.org/10.1016/j.semcdb.2016.07.007
Song, H., van der Giessen, E., & Liu, X. (2016). Strain gradient plasticity analysis of elasto-plastic contact between rough surfaces. Journal of the Mechanics and Physics of Solids, 96, 18-28. https://doi.org/10.1016/j.jmps.2016.07.008

2015

van der Giessen, E., & Seelig, T. (2015). Computational modeling of rubber-toughening in amorphous thermoplastic polymers: a review. International Journal of Fracture, 196(1-2), 207-222. https://doi.org/10.1007/s10704-015-0066-6
Sun, F., Van der Giessen, E., & Nicola, L. (2015). Effect of Plastic Flattening on the Shearing Response of Metal Asperities: A Dislocation Dynamics Analysis. Journal of Applied Mechanics-Transactions of the Asme, 82(7), Article 071009. https://doi.org/10.1115/1.4030321
Needleman, A., Tvergaard, V., & Van der Giessen, E. (2015). Indentation of elastically soft and plastically compressible solids. Acta Mechanica Sinica, 31(4), 473-480. https://doi.org/10.1007/s10409-015-0467-9
Sun, F., Van der Giessen, E., & Nicola, L. (2015). Interaction between neighboring asperities during flattening: A discrete dislocation plasticity analysis. Mechanics of Materials, 90, 157-165. https://doi.org/10.1016/j.mechmat.2015.04.012
Agnihotri, P., & van der Giessen, E. (2015). On the rate sensitivity in discrete dislocation plasticity. Mechanics of Materials, 90, 37-46. https://doi.org/10.1016/j.mechmat.2015.01.009
Song, H., Dikken, R. J., Nicola, L., & Van der Giessen, E. (2015). Plastic Ploughing of a Sinusoidal Asperity on a Rough Surface. Journal of Applied Mechanics-Transactions of the Asme, 82(7), Article 071006. https://doi.org/10.1115/1.4030318
Dikken, R. J., Van der Giessen, E., & Nicola, L. (2015). Plastic shear response of a single asperity: a discrete dislocation plasticity analysis. Philosophical Magazine, 95(34), 3845-3858. https://doi.org/10.1080/14786435.2015.1102982
Benzerga, A. A., Deshpande, V. S., & Van der Giessen, E. (Eds.) (2015). Special Issue: Alan Needleman Symposium: New Frontiers in the Mechanics of Materials Biographical Sketch of Alan Needleman (2015). Journal of Applied Mechanics-Transactions of the Asme, 82(7 Special issue), Article 070201. https://doi.org/10.1115/1.4030589
Zagar, G., Onck, P. R., & van der Giessen, E. (2015). Two Fundamental Mechanisms Govern the Stiffening of Cross-linked Networks. Biophysical Journal, 108(6), 1470-1479. https://doi.org/10.1016/j.bpj.2015.02.015

2014

Ghavami, A., Veenhoff, L. M., van der Giessen, E., & Onck, P. R. (2014). Probing the Disordered Domain of the Nuclear Pore Complex through Coarse-Grained Molecular Dynamics Simulations. Biophysical Journal, 107(6), 1393-1402. https://doi.org/10.1016/j.bpj.2014.07.060

2013

Ghavami, A., van der Giessen, E., & Onck, P. R. (2013). Coarse-Grained Potentials for Local Interactions in Unfolded Proteins. Journal of Chemical Theory and Computation, 9(1), 432-440. https://doi.org/10.1021/ct300684j
Shishvan, S. S., & Van der Giessen, E. (2013). Mode I crack analysis in single crystals with anisotropic discrete dislocation plasticity: II. Stationary crack-tip fields. Modelling and Simulation in Materials Science and Engineering, 21(6), 065007-1-065007-18. Article 065007. https://doi.org/10.1088/0965-0393/21/6/065007
Shishvan, S. S., & Van der Giessen, E. (2013). Mode I crack analysis in single crystals with anisotropic discrete dislocation plasticity: I. Formulation and crack growth. Modelling and Simulation in Materials Science and Engineering, 21(6), 065006-1-065006-21. Article 065006. https://doi.org/10.1088/0965-0393/21/6/065006
Ghavami, A., Van der Giessen, E., & Onck, P. R. (2013). Towards a Coarse-Grained Model for Unfolded Proteins. In G. A. Holzapfel, & E. Kuhl (Eds.), Computer Models in Biomechanics: From Nano to Macro (pp. 3-10). (Computer Models in Biomechanics). Springer.

2012

Sun, F., Van der Giessen, E., & Nicola, L. (2012). Plastic flattening of a sinusoidal metal surface: A discrete dislocation plasticity study. Wear, 296(1-2), 672-680. https://doi.org/10.1016/j.wear.2012.08.007
Solar, M., & Van der Giessen, E. (2012). Polymer–polymer adhesion via connector chains: An MD study of the competition between bulk dissipation and connector pull-out. Computational Materials Science, 64, 187-191. https://doi.org/10.1016/j.commatsci.2012.02.045

2011

Ghavami, A., Van der Giessen, E., & Onck, P. (2011). A Coarse-Grained Model for Unfolded Proteins. Biophysical Journal, 100(3), 59a. https://doi.org/10.1016/j.bpj.2010.12.517
Shi, J., Turteltaub, S., & Van der Giessen, E. (2011). Analysis of banded morphology in multiphase steels based on a discrete dislocation-transformation model. Modelling and Simulation in Materials Science and Engineering, 19(7), 074006-1-074006-13. Article 074006. https://doi.org/10.1088/0965-0393/19/7/074006
Van der Giessen, E. (2011). Bending Maxwell’s rule. Nature Physics, 7(12), 923-924.
Bulacu, M., & van der Giessen, E. (2011). Effects of pulling velocity and temperature revealed in polymer pull-out simulations. Europhysics Letters, 93(6), Article 63001. https://doi.org/10.1209/0295-5075/93/63001
Zagar, G., Onck, P. R., & Van der Giessen, E. (2011). Elasticity of Rigidly Cross-Linked Networks of Athermal Filaments. Macromolecules, 44(17), 7026-7033. https://doi.org/10.1021/ma201257v
Bulacu, M., & van der Giessen, E. (2011). Erratum: Effects of pulling velocity and temperature revealed in polymer pull-out simulations. Europhysics Letters, 96(4), Article 63001. https://doi.org/10.1209/0295-5075/96/49901
van der Giessen, E. (2011). MATERIALS PHYSICS Bending Maxwell's rule. Nature Physics, 7(12), 923-924.
van der Giessen, E., Geers, M., & Li, J. (2011). Micromechanics: Selected papers from the 5th International Conference on Multiscale Materials Modeling (Freiburg, Germany, 4-8 October 2010). Modelling and Simulation in Materials Science and Engineering, 19(7), Article 070201. https://doi.org/10.1088/0965-0393/19/7/070201
Shishvan, S. S., Mohammadi, S., Rahimian, M., & Van der Giessen, E. (2011). Plane-strain discrete dislocation plasticity incorporating anisotropic elasticity. International Journal of Solids and Structures, 48(2), 374-387. https://doi.org/10.1016/j.ijsolstr.2010.10.010
Shabir, Z., Van der Giessen, E., Duarte, C. A., & Simone, A. (2011). The role of cohesive properties on intergranular crack propagation in brittle polycrystals. Modelling and Simulation in Materials Science and Engineering, 19(3), 035006-1-035006-21. Article 035006. https://doi.org/10.1088/0965-0393/19/3/035006

2010

Ayas, C., & van der Giessen, E. (2010). A continuum framework for grain boundary diffusion in thin film/substrate systems. Journal of Applied Physics, 108(7), 073511-1-073511-10. Article 073511. https://doi.org/10.1063/1.3488897
Shi, J., Turteltaub, S., & Van der Giessen, E. (2010). Analysis of grain size effects on transformation-induced plasticity based on a discrete dislocation-transformation model. Journal of the Mechanics and Physics of Solids, 58(11), 1863-1878. https://doi.org/10.1016/j.jmps.2010.07.021
Shishvan, S. S., Nicola, L., & Van der Giessen, E. (2010). Bauschinger effect in unpassivated freestanding thin films. Journal of Applied Physics, 107(9), 093529-1-093529-9. Article 093529. https://doi.org/10.1063/1.3407505
Giessen, E. V. D. (2010). Discrete Dislocation Plasticity Analysis of Cracks and Fracture. In R. Pippan, & P. Gumbsch (Eds.), MULTISCALE MODELLING OF PLASTICITY AND FRACTURE BY MEANS OF DISLOCATION MECHANICS (522 ed., pp. 185-212). (CISM Courses and Lectures; Vol. 522). Springer.
Zhang, Y., Van der Giessen, E., & Nicola, L. (2010). Discrete dislocation simulations of the flattening of nanoimprinted surfaces. Modelling and Simulation in Materials Science and Engineering, 18(3), 034006-1-034006-17. Article 034006. https://doi.org/10.1088/0965-0393/18/3/034006
Zhang, Y., Van Der Giessen, E., & Nicola, L. (2010). Dislocation dynamic simulations of metal nanoimprinting. In Mechanical Behavior at Small Scales - Experiments and Modeling (1st ed., pp. 199-204). (Materials Research Society Symposium Proceedings; Vol. 1224). Cambridge University Press.
Shishvan, S. S., & Van der Giessen, E. (2010). Distribution of dislocation source length and the size dependent yield strength in freestanding thin films. Journal of the Mechanics and Physics of Solids, 58(5), 678-695. https://doi.org/10.1016/j.jmps.2010.02.011
Curtin, W. A., Deshpande, V. S., Needleman, A., Van der Giessen, E., & Wallin, M. (2010). Hybrid discrete dislocation models for fatigue crack growth. International Journal of Fatigue, 32(9), 1511-1520. https://doi.org/10.1016/j.ijfatigue.2009.10.015
Kumar, R., Szekely, F., & Van der Giessen, E. (2010). Modelling dislocation transmission across tilt grain boundaries in 2D. Computational Materials Science, 49(1), 46-54. https://doi.org/10.1016/j.commatsci.2010.04.018
Louhivuori, M., Risselada, H., Giessen, E. V. D., & Marrink, S. J. (2010). Release of content through mechano-sensitive gates in pressurized liposomes. Proceedings of the National Academy of Sciences of the United States of America, 107(46), 19856-19860. https://doi.org/10.1073/pnas.1001316107
Zagar, G., Onck, P. R., & Van der Giessen, E. (2010). Small Strain Topological Effects of Biopolymer Networks with Rigid Cross-Links. In K. Garikipati, & EM. Arruda (Eds.), IUTAM SYMPOSIUM ON CELLULAR, MOLECULAR AND TISSUE MECHANICS, PROCEEDINGS (16 ed., pp. 161-169). (IUTAM Bookseries; Vol. 16). Springer. https://doi.org/10.1007/978-90-481-3348-2_13

2009

Seelig, T., & Van der Giessen, E. (2009). A cell model study of crazing and matrix plasticity in rubber-toughened glassy polymers. Computational Materials Science, 45(3), 725-728. https://doi.org/10.1016/j.commatsci.2008.05.024
Shabir, Z., Van Der Giessen, E., Duarte, C. A., & Simone, A. (2009). Analysis of intergranular crack propagation in brittle polycrystals with a generalized finite element method and a network algorithm. In Computational Plasticity X - Fundamentals and Applications (Computational Plasticity X - Fundamentals and Applications).
Kumar, R., Nicola, L., & Van der Giessen, E. (2009). Density of grain boundaries and plasticity size effects: A discrete dislocation dynamics study. Materials science and engineering a-Structural materials properties microstructure and processing, 527(1-2), 7-15. https://doi.org/10.1016/j.msea.2009.08.072
Shi, J., Turteltaub, S., & Van der Giessen, E. (2009). EFFECT OF AUSTENITIC CRYSTAL ORIENTATION IN A MULTIPHASE STEEL ANALYZED BY A DISCRETE DISLOCATION-TRANSFORMATION MODEL. International Journal of Material Forming, 2, 435-438. https://doi.org/10.1007/s12289-009-0469-x
Ayas, C., & Van der Giessen, E. (2009). Erratum: Dislocation dynamics simulations of the relaxation of intrinsic stress in thin films (vol 88, pg 3461, 2008). Philosophical Magazine, 89(2), 197. https://doi.org/10.1080/14786430902719822
Bulacu, M., & van der Giessen, E. (2009). Forced reptation revealed by chain pull-out simulations. Journal of Chemical Physics, 131(6), 064904-1-064904-12. Article 064904. https://doi.org/10.1063/1.3193725
Zagar, G., Onck, P. R., & Giessen, E. V. D. (2009). Mechanics of Biophysical Networks with Flexible Cross-links. Biophysical Journal, 96(3), 122a-123a. https://doi.org/10.1016/j.bpj.2008.12.544
Louhivuori, M., Risselada, J., Giessen, E. V. D., & Marrink, S.-J. (2009). MscL Gating In Liposomes. 254a-254a.
Ayas, C., & Van der Giessen, E. (2009). Stress relaxation in thin film/substrate systems by grain boundary diffusion: A discrete dislocation framework. Modelling and Simulation in Materials Science and Engineering, 17(6), Article 064007. https://doi.org/10.1088/0965-0393/17/6/064007

2008

Ayas, C., & Van Der Giessen, E. (2008). A discrete dislocation approach to grain boundary diffusion. In A. El-Azab (Ed.), Proceedings of 4th International Conference on Multiscale Materials Modeling, MMM 2008 (pp. 768-771). (Proceedings of 4th International Conference on Multiscale Materials Modeling, MMM 2008). Department of Scientific Computing, Florida State University.
Shi, J., Turteltaub, S., Van der Giessen, E., & Remmers, J. J. C. (2008). A discrete dislocation–transformation model for austenitic single crystals. Modelling and Simulation in Materials Science and Engineering, 16(5), Article 055005. https://doi.org/10.1088/0965-0393/16/5/055005
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