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Research Zernike (ZIAM) Micromechanics Onck Group

Publications

2024

Jafarinia, H., van der Giessen, E., & Onck, P. R. (2024). C9orf72 polyPR directly binds to various nuclear transport components. eLife, 12, Article RP89694. https://doi.org/10.7554/eLife.89694
Jafarinia, H., Van der Giessen, E., & Onck, P. R. (2024). C9orf72 polyPR interaction with the nuclear pore complex. Biophysical Journal, 123(20), 3533-3539. https://doi.org/10.1016/j.bpj.2024.08.024
Pramanik, R., Verstappen, R. W. C. P., & Onck, P. R. (2024). Computational fluid-structure interaction in biology and soft robots: A review. Physics of Fluids, 36(10), Article 101302. https://doi.org/10.1063/5.0226743
Pramanik, R., Verstappen, R. W. C. P., & Onck, P. (2024). Nature-inspired miniaturized magnetic soft robotic swimmers. Applied physics reviews, 11(2), Article 021312 . https://doi.org/10.1063/5.0189185
Otto, T. A., Bergsma, T., Dekker, M., Mouton, S. N., Gallardo, P., Wolters, J. C., Steen, A., Onck, P. R., & Veenhoff, L. M. (2024). Nucleoporin Nsp1 surveils the phase state of FG-Nups. Cell reports, 43(10), Article 114793. https://doi.org/10.1016/j.celrep.2024.114793
Wang, T., ul Islam, T., Steur, E., Homan, T., Aggarwal, I., Onck, P. R., den Toonder, J. M. J., & Wang, Y. (2024). Programmable metachronal motion of closely packed magnetic artificial cilia. Lab on a Chip, 24(6), 1573-1585. https://doi.org/10.1039/d3lc00956d
Adupa, V., Ustyantseva, E., Kampinga, H. H., & Onck, P. R. (2024). Tertiary structure and conformational dynamics of the anti-amyloidogenic chaperone DNAJB6b at atomistic resolution. Nature Communications, 15(1), Article 3285. https://doi.org/10.1038/s41467-024-46587-z
Driver, M. D., Postema, J., & Onck, P. R. (2024). The Effect of Dipeptide Repeat Proteins on FUS/TDP43-RNA Condensation in C9orf72 ALS/FTD. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 128(39), 9405–9417. https://doi.org/10.1021/acs.jpcb.4c04663

2023

Zhang, S., Hu, X., Li, M., Bozuyuk, U., Zhang, R., Suadiye, E., Han, J., Wang, F., Onck, P., & Sitti, M. (2023). 3D-printed micrometer-scale wireless magnetic cilia with metachronal programmability. Science Advances, 9(12), Article eadf9462. https://doi.org/10.1126/sciadv.adf9462
Shakibi, S., Onck, P. R., & Van der Giessen, E. (2023). A One-Bead-Per-Saccharide (1BPS) Model for Glycosaminoglycans. Journal of Chemical Theory and Computation, 19(16), 5491–5502. https://doi.org/10.1021/acs.jctc.3c00238
Klughammer, N., Barth, A., Dekker, M., Fragasso, A., Onck, P. R., & Dekker, C. (2023). Diameter Dependence of Transport through Nuclear Pore Complex Mimics Studied Using Optical Nanopores. eLife, 12, Article eLife.87174.1. Advance online publication. https://doi.org/10.7554/eLife.87174.3
Heesink, G., Marseille, M. J., Fakhree, M. A. A., Driver, M. D., van Leijenhorst-Groener, K. A., Onck, P. R., Blum, C., & Claessens, M. M. A. E. (2023). Exploring Intra- and Inter-Regional Interactions in the IDP α-Synuclein Using smFRET and MD Simulations. Biomacromolecules, 24(8), 3680–3688. https://doi.org/10.1021/acs.biomac.3c00404
Shakibi, S., Onck, P. R., Van, E., & van der Giessen, E. (2023). Extracellular proteoglycans: A multiscale computational study. Biophysical Journal, 122(3 Supplement 1), 420a-421a. https://doi.org/10.1016/j.bpj.2022.11.2279
Pramanik, R., Verstappen, R. W. C. P., & Onck, P. R. (2023). Magnetic-field-induced propulsion of jellyfish-inspired soft robotic swimmers. Physical Review E, 107, Article 014607. https://doi.org/10.1103/PhysRevE.107.014607
De Jong, E., Van Der Klok, M. L., Den Toonder, J. M. J., & Onck, P. R. (2023). Numerical modeling and quantification of droplet mixing using mechanowetting. Physics of Fluids, 35(4), Article 043313. https://doi.org/10.1063/5.0143208
Dekker, M., Van der Giessen, E., & Onck, P. R. (2023). Phase separation of intrinsically disordered FG-Nups is driven by highly dynamic FG motifs. Proceedings of the National Academy of Sciences of the United States of America, 120(25), Article e2221804120. https://doi.org/10.1073/pnas.2221804120
Kind, L., Driver, M., Raasakka, A., Onck, P. R., Njølstad, P. R., Arnesen, T., & Kursula, P. (2023). Structural properties of the HNF-1A transactivation domain. Frontiers in Molecular Biosciences, 10, Article 1249939. https://doi.org/10.3389/fmolb.2023.1249939

2022

De Jong, E., Den Toonder, J. M. J., & Onck, P. R. (2022). Directional droplet transport on switchable ratchets by mechanowetting. Microfluidics and Nanofluidics, 26(4), Article 32. https://doi.org/10.1007/s10404-022-02537-z
Zhang, R., Toonder, J. D., & Onck, P. R. (2022). Metachronal patterns by magnetically-programmable artificial cilia surfaces for low Reynolds number fluid transport and mixing. Soft Matter, 18(20), 3902-3909. https://doi.org/10.1039/d1sm01680f
ul Islam, T., Wang, Y., Aggarwal, I., Cui, Z., Eslami Amirabadi, H., Garg, H., Kooi, R., Venkataramanachar, B. B., Wang, T., Zhang, S., Onck, P. R., & den Toonder, J. M. J. (2022). Microscopic artificial cilia - a review. Lab on a Chip, 22, 1650-1679 . https://doi.org/10.1039/D1LC01168E
Jafarinia, H., Van der Giessen, E., & Onck, P. R. (2022). Molecular basis of C9orf72 poly-PR interference with the β-karyopherin family of nuclear transport receptors. Scientific Reports, 12(1), Article 21324. https://doi.org/10.1038/s41598-022-25732-y
Peng, W., Sun, K., & Onck, P. (2022). Structure–property relations of three-dimensional nanoporous template-based graphene foams. Extreme Mechanics Letters, 54, Article 101737. https://doi.org/10.1016/j.eml.2022.101737
Fragasso, A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van der Giessen, E., Onck, P. R., & Dekker, C. (2022). Transport receptor occupancy in nuclear pore complex mimics. Nano Research, 15(11), 9689–9703. https://doi.org/10.1007/s12274-022-4647-1

2021

van der Klok, M., Dekker, M., Van der Giessen, E., & Onck, P. R. (2021). A 4BPA Coarse-Grained Molecular Dynamics Study on the Aggregation of Polyglutamine. Biophysical Journal, 120(3 Suppl. 1), 28A-28A. https://doi.org/10.1016/j.bpj.2020.11.428
Fragasso, A., de Vries, H. W., Andersson, J., van der Sluis, E. O., van der Giessen, E., Dahlin, A., Onck, P. R., & Dekker, C. (2021). A designer FG-Nup that reconstitutes the selective transport barrier of the nuclear pore complex. Nature Communications, 12(1), Article 2010. https://doi.org/10.1038/s41467-021-22293-y
Pramanik, R., Onck, P. R., & Verstappen, R. W. C. P. (2021). Bi-directional locomotion of a magnetically-actuated jellyfish-inspired soft robot. In Advances in Robotics, AIR 2021 - 5th International Conference of the Robotics Society (pp. 1-5). Article 3478591 (ACM International Conference Proceeding Series). Association for Computing Machinery. https://doi.org/10.1145/3478586.3478591
De Vries, H., Fragasso, A., Otto, T., Klughammer, N., Andersson, J., Sluis, E. V. D., Steen, A., Dahlin, A., Veenhoff, L., Dekker, C., Giessen, E. V. D., & Onck, P. (2021). De Novo Computational Design of Disordered Fg-Nucleoporins. Biophysical Journal, 120(3), 29a-30a. https://doi.org/10.1016/j.bpj.2020.11.435
De Jong, E., Kremer, R., Liu, L., Den Toonder, J. M. J., & Onck, P. R. (2021). Mechanowetting drives droplet and fluid transport on traveling surface waves generated by light-responsive liquid crystal polymers. Physics of Fluids, 33(6), Article 063307. https://doi.org/10.1063/5.0050864
Hoogenboom, B. W., Hough, L. E., Lemke, E. A., Lim, R. Y. H., Onck, P. R., & Zilman, A. (2021). Physics of the nuclear pore complex: Theory, modeling and experiment. Physics Reports. https://doi.org/10.1016/j.physrep.2021.03.003
Driver, M. D., & Onck, P. R. (2021). RNA-Protein Interactions in Molecular Life and Health: A Computational Approach. Biophysical Journal, 120(3), 81A-81A. https://doi.org/10.1016/j.bpj.2020.11.702
Ren, Z., Zhang, R., Soon, R. H., Liu, Z., Hu, W., Onck, P. R., & Sitti, M. (2021). Soft-bodied adaptive multimodal locomotion strategies in fluid-filled confined spaces. Science Advances, 7(27), Article eabh2022. https://doi.org/10.1126/sciadv.abh2022
Jafarinia, H., Van der Giessen, E., & Onck, P. R. (2021). The Interaction between Poly-PR Dipeptide Repeat Proteins and the Nuclear Pore Complex. Biophysical Journal, 120(3), 285A-285A. https://doi.org/10.1016/j.bpj.2020.11.1829
Zhang, R., den Toonder, J., & Onck, P. R. (2021). Transport and mixing by metachronal waves in nonreciprocal soft robotic pneumatic artificial cilia at low Reynolds numbers. Physics of Fluids, 33(9), Article 092009. https://doi.org/10.1063/5.0054929
Pappas, C. G., Liu, B., Marić, I., Ottelé, J., Kiani, A., van der Klok, M. L., Onck, P. R., & Otto, S. (2021). Two Sides of the Same Coin: Emergence of Foldamers and Self-Replicators from Dynamic Combinatorial Libraries. Journal of the American Chemical Society, 143(19), 7388–7393. https://doi.org/10.1021/jacs.1c00788
Ye, J., Liu, L., Oakdale, J., Lefebvre, J., Bhowmick, S., Voisin, T., Roehling, J. D., Smith, W. L., Cerón, M. R., van Ham, J., Bayu Aji, L. B., Biener, M. M., Wang, Y. M., Biener, J., & Onck, P. R. (2021). Ultra-low-density digitally architected carbon with a strutted tube-in-tube structure. Nature Materials, 20(11), 1498-1505. https://doi.org/10.1038/s41563-021-01125-w

2020

Zhang, S., Wang, Y., Onck, P., & den Toonder, J. (2020). A concise review of microfluidic particle manipulation methods. Microfluidics and Nanofluidics, 24(4), Article 24. https://doi.org/10.1007/s10404-020-2328-5
Fragasso, A., de Vries, H., van der Sluis, E., Van der Giessen, E., Onck, P. R., & Dekker, C. (2020). A Designer FG-Nup that Reconstitutes the Selective Transport Barrier of the Nuclear Pore Complex. Biophysical Journal, 118(3), 341A-342A. https://doi.org/10.1101/2020.02.04.933994
Zhang, S., Zuo, P., Wang, Y., Onck, P. R., & den Toonder, J. M. J. (2020). Anti-Biofouling and Self-Cleaning Surfaces Featured with Magnetic Artificial Cilia. ACS Applied Materials & Interfaces, 12(24), 27726–27736. https://doi.org/10.1021/acsami.0c05403
Zhang, S., Zuo, P., Wang, Y., Onck, P. R., & den Toonder, J. M. J. (2020). Anti-biofouling surfaces featured with magnetic artificial cilia. In MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences (pp. 1001-1002). (MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences). Chemical and Biological Microsystems Society .
Zhang, S., Wang, Y., Onck, P., & den Toonder, J. (2020). Artificial mini-heart: An internal micropump based on magnetically actuated artificial cilia that can induce flows in a microfluidic channel network. In 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017 (pp. 1125-1126). (21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017). Chemical and Biological Microsystems Society .
Dong, X., Lum, G. Z., Hu, W., Zhang, R., Ren, Z., Onck, P. R., & Sitti, M. (2020). Bioinspired cilia arrays with programmable nonreciprocal motion and metachronal coordination. Science Advances, 6(45), Article eabc9323 . https://doi.org/10.1126/sciadv.abc9323
de Vries, H., Fragasso, A., van der Sluis, E. O., Dekker, C., Van der Giessen, E., & Onck, P. R. (2020). Coarse-Grained Modeling of Nuclear Pore Complex Mimics Comprising Designer FG-Nucleoporins. Biophysical Journal, 118(3), 342A-343A. https://doi.org/10.1016/j.bpj.2019.11.1906
Zhang, S., Zhang, R., Wang, Y., Onck, P. R., & den Toonder, J. M. J. (2020). Controlled Multidirectional Particle Transportation by Magnetic Artificial Cilia. Acs Nano, 14(8), 10313-10323. https://doi.org/10.1021/acsnano.0c03801
Mehta, K., Peeketi, A. R., Liu, L., Broer, D., Onck, P., & Annabattula, R. K. (2020). Design and applications of light responsive liquid crystal polymer thin films. Applied physics reviews, 7(4), Article 041306. https://doi.org/10.1063/5.0014619
Milana, E., Zhang, R., Vetrano, M. R., Peerlinck, S., De Volder, M., Onck, P. R., Reynaerts, D., & Gorissen, B. (2020). Metachronal patterns in artificial cilia for low Reynolds number fluid propulsion. Science Advances, 6(49), Article eabd2508. https://doi.org/10.1126/sciadv.abd2508
de Jong, E., Den Toonder, J. M. J., & Onck, P. R. (2020). Microfluidic slug transport on traveling-wave surface topographies by mechanowetting. Physical review fluids, 5(6), Article 063604. https://doi.org/10.1103/PhysRevFluids.5.063604
Mehta, K., Peeketi, A. R., Sol, J. A. H. P., Debije, M. G., Onck, P. R., & Annabattula, R. K. (2020). Modeling of surface waves in photo-responsive viscoelastic liquid crystal thin films under a moving light source. Mechanics of Materials, 147, Article 103388. https://doi.org/10.1016/j.mechmat.2020.103388
Jafarinia, H., van der Giessen, E., & Onck, P. R. (2020). Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD. Biophysical Journal, 119(4), 843-851. https://doi.org/10.1016/j.bpj.2020.07.005

2019

Rempel, I. L., Popken, P., Ghavami, A., Mishra, A., Hapsari, R. A., Wolters, A. H. G., Veldsink, A. C., Klaassens, M., Meinema, A. C., Poolman, B., Giepmans, B. N. G., Onck, P. R., Steen, A., & Veenhoff, L. M. (2020). Flexible and Extended Linker Domains Support Efficient Targeting of Heh2 to the Inner Nuclear Membrane. Structure, 28(2), 185-195.e5. https://doi.org/10.1016/j.str.2019.11.003
Rempel, I. L., Crane, M. M., Thaller, D. J., Mishra, A., Jansen, D. P. M., Janssens, G., Popken, P., Akşit, A., Kaeberlein, M., van der Giessen, E., Steen, A., Onck, P. R., Lusk, C. P., & Veenhoff, L. M. (2019). Age-dependent deterioration of nuclear pore assembly in mitotic cells decreases transport dynamics. eLife, 8, Article e48186. https://doi.org/10.7554/eLife.48186
Zhang, S., Wang, Y., Onck, P. R., & den Toonder, J. M. J. (2019). Anti-fouling surfaces featured with magnetic artificial cilia. In 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019 (pp. 233-234). (23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019). Chemical and Biological Microsystems Society .
Wang, Y., de Jong, E., Onck, P. R., & den Toonder, J. M. J. (2019). Climbing droplets driven by mechanowetting. In 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019 (pp. 987-988). (23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019). Chemical and Biological Microsystems Society .
De Jong, E., Wang, Y., Den Toonder, J. M. J., & Onck, P. R. (2019). Climbing droplets driven by mechanowetting on transverse waves. Science Advances, 5(6), Article eaaw0914. https://doi.org/10.1126/sciadv.aaw0914
Liu, L., & Onck, P. R. (2019). Light-driven topographical morphing of azobenzene-doped liquid crystal polymer films via tunable photo-polymerization induced diffusion. Journal of the Mechanics and Physics of Solids, 123, 247-266. https://doi.org/10.1016/j.jmps.2018.09.021
Zhang, S., Wang, Y., Onck, P. R., & den Toonder, J. M. J. (2019). Removal of Microparticles by Ciliated Surfaces-an Experimental Study. Advanced Functional Materials, 29(6), Article 1806434. https://doi.org/10.1002/adfm.201806434
Mishra, A., Sipma, W., Veenhoff, L. M., Van der Giessen, E., & Onck, P. R. (2019). The effect of FG-nup phosphorylation on NPC selectivity: A one-bead-per-amino-acid molecular dynamics study. International Journal of Molecular Sciences, 20(3), Article 596. https://doi.org/10.3390/ijms20030596
Liu, L., Broer, D. J., & Onck, P. R. (2019). Travelling waves on photo-switchable patterned liquid crystal polymer films directed by rotating polarized light. Soft Matter, 15(40), 8040-8050. https://doi.org/10.1039/c9sm01594a

2018

Zhang, S., Wang, Y., Onck, P. R., & Den Toonder, J. M. J. (2018). Anti-fouling surfaces: Removal of micro-particles by magnetic artificial cilia. In 22nd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2018 (pp. 1661-1663). (22nd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2018; Vol. 3). Chemical and Biological Microsystems Society .
Ketterer, P., Ananth, A. N., Laman Trip, D. S., Mishra, A., Bertosin, E., Ganji, M., van der Torre, J., Onck, P., Dietz, H., & Dekker, C. (2018). DNA origami scaffold for studying intrinsically disordered proteins of the nuclear pore complex. Nature Communications, 9(1), Article 902. https://doi.org/10.1038/s41467-018-03313-w
Boonstra, S., Blijleven, J. S., Roos, W. H., Onck, P. R., van der Giessen, E., & van Oijen, A. M. (2018). Hemagglutinin-Mediated Membrane Fusion: A Biophysical Perspective. Annual Review of Biophysics, 47. https://doi.org/10.1146/annurev-biophys-070317-033018
Singh, R. P., & Onck, P. R. (2018). Magnetic field induced deformation and buckling of slender bodies. International Journal of Solids and Structures, 143, 29-58. https://doi.org/10.1016/j.ijsolstr.2018.02.029
Onck, P. R., & Deshpande, V. S. (2018). Mechanobiology: The role of mechanics in health and disease. Extreme Mechanics Letters, 25, 45. https://doi.org/10.1016/j.eml.2018.10.008
Akhtar, N., Thomas, P. J., Svardal, B., Almenningen, S., de Jong, E., Magnussen, S., Onck, P., Fernø, M. A., & Holst, B. (2018). Pillars or Pancakes? Self-cleaning surfaces without coating. Nano Letters, 18(12), 7509-7514. https://doi.org/10.1021/acs.nanolett.8b02982
Ghavami, A., Van der Giessen, E., & Onck, P. R. (2018). Sol-gel transition in solutions of FG-Nups of the nuclear pore complex. Extreme Mechanics Letters, 22, 36-41. https://doi.org/10.1016/j.eml.2018.04.006
Ananth, A. N., Mishra, A., Frey, S., Dwarkasing, A., Versloot, R., van der Giessen, E., Görlich, D., Onck, P., & Dekker, C. (2018). Spatial structure of disordered proteins dictates conductance and selectivity in nuclear pore complex mimics. eLife, 7, Article 31510. https://doi.org/10.7554/eLife.31510
Liu, L., & Onck, P. R. (2018). Topographical changes in photo-responsive liquid crystal films: a computational analysis. Soft Matter, 14(12), 2411-2428. https://doi.org/10.1039/c7sm02474f
Zhang, S., Wang, Y., Lavrijsen, R., Onck, P. R., & den Toonder, J. M. J. (2018). Versatile microfluidic flow generated by moulded magnetic artificial cilia. Sensors and actuators b-Chemical, 263, 614-624. https://doi.org/10.1016/j.snb.2018.01.189

2017

Boonstra, S., Onck, P. R., & Van der Giessen, E. (2017). Computation of Hemagglutinin Free Energy Difference by the Confinement Method. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 121(50), 11292-11303. https://doi.org/10.1021/acs.jpcb.7b09699
Fuertes, G., Banterle, N., Ruff, K. M., Chowdhury, A., Mercadante, D., Koehler, C., Kachala, M., Estrada Girona, G., Milles, S., Mishra, A., Onck, P. R., Gräter, F., Esteban-Martín, S., Pappu, R. V., Svergun, D. I., & Lemke, E. A. (2017). Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements. Proceedings of the National Academy of Sciences of the United States of America, 114(31), E6342-E6351. https://doi.org/10.1073/pnas.1704692114
Liu, L., & Onck, P. R. (2017). Enhanced Deformation of Azobenzene-Modified Liquid Crystal Polymers under Dual Wavelength Exposure: A Photophysical Model. Physical Review Letters, 119(5), Article 057801. https://doi.org/10.1103/PhysRevLett.119.057801
Onck, P. (2017). Protein Mechanics: From Amino Acid to Swimming Cells. Procedia IUTAM, 20, 73-80. https://doi.org/10.1016/j.piutam.2017.03.010

2016

Boonstra, S., Onck, P. R., & van der Giessen, E. (2016). CHARMM TIP3P Water Model Suppresses Peptide Folding by Solvating the Unfolded State. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 120(15), 3692-3698. https://doi.org/10.1021/acs.jpcb.6b01316
Namdeo, S., & Onck, P. R. (2016). Emergence of flagellar beating from the collective behavior of individual ATP-powered dyneins. Physical Review E, 94(4), Article 042406. https://doi.org/10.1103/PhysRevE.94.042406
Ghavami, A., van der Giessen, E., & Onck, P. R. (2016). Energetics of Transport through the Nuclear Pore Complex. PLoS ONE, 11(2), Article e0148876. https://doi.org/10.1371/journal.pone.0148876
Ghavami, A., Veenhoff, L. M., Van der Giessen, E., & Onck, P. R. (2016). Intrinsically Disordered Proteins: Gatekeepers of the Nuclear Pore Complex. Biophysical Journal, 110(3, suppl. 1), 358A-358A. https://doi.org/10.1016/j.bpj.2015.11.1930
Blijleven, J. S., Boonstra, S., Onck, P. R., van der Giessen, E., & van Oijen, A. M. (2016). Mechanisms of influenza viral membrane fusion. Seminars in Cell & Developmental Biology, 60, 78-88. https://doi.org/10.1016/j.semcdb.2016.07.007

2015

Saane, S. S. R., & Onck, P. R. (2015). Atomistic modeling of the stiffness, strength and charge-induced actuation of graphene nanofoams. Extreme Mechanics Letters, 5, 54-61. https://doi.org/10.1016/j.eml.2015.09.006
Khaderi, S. N., den Toonder, J. M. J., & Onck, P. R. (2015). Magnetic Artificial Cilia for Microfluidic Propulsion. In S. P. A. Bordas, & D. S. Balint (Eds.), Advances in Applied Mechanics (Vol. 48, pp. 1-78). Academic Press. https://doi.org/10.1016/bs.aams.2015.10.001
Liu, D., Liu, L., Onck, P. R., & Broer, D. J. (2015). Reverse switching of surface roughness in a self-organized polydomain liquid crystal coating. Proceedings of the National Academy of Science of the United States of America, 112(13), 3880-3885. https://doi.org/10.1073/pnas.1419312112
Popken, P., Ghavami, A., Onck, P. R., Poolman, B., & Veenhoff, L. M. (2015). Size-dependent leak of soluble and membrane proteins through the yeast nuclear pore complex. Molecular Biology of the Cell, 26(7), 1386-1394. https://doi.org/10.1091/mbc.E14-07-1175
Zagar, G., Onck, P. R., & van der Giessen, E. (2015). Two Fundamental Mechanisms Govern the Stiffening of Cross-linked Networks. Biophysical Journal, 108(6), 1470-1479. https://doi.org/10.1016/j.bpj.2015.02.015

2014

Flores-Johnson, E. A., Ming Shen, L., Annabattula, R. K., Onck, P., Gen Shen, Y., & Chen, Z. (2014). Finite element modelling of stress-induced fracture in Ti-Si-N films. Applied Mechanics and Materials, 553, 10-15. http://dx.doi.org/10.4028/www.scientific.net/AMM.553.10
Saane, S. S. R., Mangipudi, K. R., Loos, K. U., De Hosson, J. T. M., & Onck, P. R. (2014). Multiscale modeling of charge-induced deformation of nanoporous gold structures. Journal of the Mechanics and Physics of Solids, 66, 1-15. https://doi.org/10.1016/j.jmps.2014.01.007
Namdeo, S., Khaderi, S. N., & Onck, P. R. (2014). Numerical modelling of chirality-induced bi-directional swimming of artificial flagella. Proceedings of the Royal Society A-Mathematical Physical and Engineering Sciences, 470(2162), Article 20130547. https://doi.org/10.1098/rspa.2013.0547
Detsi, E., Salverda, M., Onck, P. R., & De Hosson, J. T. M. (2014). On the localized surface plasmon resonance modes in nanoporous gold films. Journal of Applied Physics, 115(4), 044308-1 - 044308-8. Article 044308. https://doi.org/10.1063/1.4862440
Ghavami, A., Veenhoff, L. M., van der Giessen, E., & Onck, P. R. (2014). Probing the Disordered Domain of the Nuclear Pore Complex through Coarse-Grained Molecular Dynamics Simulations. Biophysical Journal, 107(6), 1393-1402. https://doi.org/10.1016/j.bpj.2014.07.060
Flores-Johnson, E. A., Shen, L., Annabattula, R. K., Onck, P. R., Shen, Y. G., & Chen, Z. (2014). The effect of interface adhesion on buckling and cracking of hard thin films. Applied Physics Letters, 105(16), Article 161912. https://doi.org/10.1063/1.4900443

2013

den Toonder, J., & Onck, P. (Eds.) (2013). Artifical Cilia. RSC publishing. https://doi.org/10.1039/9781849737098
Saane, S. S. R., De Hosson, J. T. M., & Onck, P. R. (2013). Atomistic modelling of charge-induced deformation of gold nanowires. Modelling and Simulation in Materials Science and Engineering, 21(5), 055024-1-055024-13. Article 055024. https://doi.org/10.1088/0965-0393/21/5/055024
Ghavami, A., van der Giessen, E., & Onck, P. R. (2013). Coarse-Grained Potentials for Local Interactions in Unfolded Proteins. Journal of Chemical Theory and Computation, 9(1), 432-440. https://doi.org/10.1021/ct300684j
Khaderi, S., den Toonder, J. M. J., & Onck, P. (2013). Computational Design of Magnetic Artificial Cilia. In J. M. J. den Toonder, & P. R. Onck (Eds.), Artificial Cilia Royal Society of Chemistry.
Detsi, E., Onck, P. R., & De Hosson, J. T. M. (2013). Electrochromic artificial muscles based on nanoporous metal-polymer composites. Applied Physics Letters, 103(19), 193101-1-193101-3. Article 193101. https://doi.org/10.1063/1.4827089
Khaderi, S., Hussong, J., Westerweel, J., den Toonder, J., & Onck, P. (2013). Fluid propulsion using magnetically-actuated artificial cilia: Experiments and simulations. RSC Advances, 3(31), 12735-12742. https://doi.org/10.1039/c3ra42068j
Zhang, T., Maire, E., Adrien, J., Onck, P. R., & Salvo, L. (2013). Local Tomography Study of the Fracture of an ERG Metal Foam. Advanced Engineering Materials, 15(8), 767-772. https://doi.org/10.1002/adem.201300004
Detsi, E., Onck, P., & De Hosson, J. T. M. (2013). Metallic Muscles at Work: High Rate Actuation in Nanoporous Gold/Polyaniline Composites. Acs Nano, 7(5), 4299-4306. https://doi.org/10.1021/nn400803x
den Toonder, J. M. J., & Onck, P. R. (2013). Microfluidic manipulation with artificial/bioinspired cilia. Trends in Biotechnology, 31(2), 85-91. https://doi.org/10.1016/j.tibtech.2012.11.005
Zinchenko, O., De Raedt, H. A., Detsi, E., Onck, P. R., & De Hosson, J. T. M. (2013). Nanoporous gold formation by dealloying: A Metropolis Monte Carlo study. Computer Physics Communications, 184(6), 1562-1569. https://doi.org/10.1016/j.cpc.2013.02.004
Detsi, E., Selles, M. S., Onck, P. R., & De Hosson, J. T. M. (2013). Nanoporous silver as electrochemical actuator. Scripta Materialia, 69(2), 195-198. https://doi.org/10.1016/j.scriptamat.2013.04.003
Namdeo, S., Khaderi, S. N., & Onck, P. R. (2013). Swimming dynamics of bidirectional artificial flagella. Physical Review E, 88(4), 043013-1-043013-11. Article 043013. https://doi.org/10.1103/PhysRevE.88.043013
Ghavami, A., Van der Giessen, E., & Onck, P. R. (2013). Towards a Coarse-Grained Model for Unfolded Proteins. In G. A. Holzapfel, & E. Kuhl (Eds.), Computer Models in Biomechanics: From Nano to Macro (pp. 3-10). (Computer Models in Biomechanics). Springer.
Last modified:09 June 2023 8.36 p.m.