Publication list
2024
Dong,
J., Bai, Y., Wang, Q., Chen, Q., Li, X., Wang, Y., Ji, H., Meng,
X., Pijning, T., Svensson, B., Dijkhuizen,
L., Abou Hachem, M., & Jin, Z. (2024). Insights
into the Structure–Function Relationship of GH70 GtfB
α-Glucanotransferases from the Crystal Structure and Molecular
Dynamic Simulation of a Newly Characterized Limosilactobacillus
reuteri N1 GtfB Enzyme. Journal of Agricultural
and Food Chemistry, 72(10), 5391-5402. Article
acs.jafc.4c00104. https://doi.org/10.1021/acs.jafc.4c00104
Hameleers,
L., Gaenssle, L. A., Bertran-Llorens, S.,
Pijning, T., & Jurak, E. (2024).
Polysaccharide utilization loci encoded DUF1735 likely
functions as membrane-bound spacer for carbohydrate active
enzymes. FEBS Open Bio,
14(7), 1133-1146. https://doi.org/10.1002/2211-5463.13816
Dong,
J., Abou Hachem, M., Wang, Y., Li, X., Zhang, B., Pijning,
T., Svensson, B., Dijkhuizen, L., Jin, Z.,
& Bai, Y. (2024). Tailor-Made α-Glucans by
Engineering the Processivity of α-Glucanotransferases via
Tunnel-Cleft Active Center Interconversions.
Journal of Agricultural and Food Chemistry,
72(19), 11041–11050. https://doi.org/10.1021/acs.jafc.4c01842
Pijning,
T., & Dijkhuizen, L. (2024).
Unprecedented Diversity of the Glycoside Hydrolase Family 70:
A Comprehensive Analysis of Sequence, Structure, and
Function. Journal of Agricultural and Food
Chemistry, 72(30), 16911-16929. Article
4c04807. https://doi.org/10.1021/acs.jafc.4c04807
Molina-Sánchez,
M. D., Martínez-Abarca, F., Millán, V., Mestre, M.
R., Stehantsev, P., Stetsenko, A.,
Guskov, A., & Toro, N. (2024). Adaptive immunity
of type VI CRISPR-Cas systems associated with reverse
transcriptase-Cas1 fusion proteins. Nucleic Acids
Research, Article gkae1154. Advance online publication.
https://doi.org/10.1093/nar/gkae1154
Podoliak,
E., Lamm, G. H. U., Marin, E., Schellbach, A. V.,
Fedotov, D. A., Stetsenko, A., Asido, M., Maliar, N.,
Bourenkov, G., Balandin, T., Baeken, C., Astashkin, R., Schneider,
T. R., Bateman, A., Wachtveitl, J., Schapiro, I., Busskamp,
V., Guskov, A., Gordeliy, V., ... Kovalev, K. (2024).
A subgroup of light-driven sodium pumps with an additional
Schiff base counterion. Nature
Communications, 15, Article 3119. https://doi.org/10.1038/s41467-024-47469-0
Sauciuc,
A., Whittaker, J., Tadema,
M., Tych, K., Guskov, A.,
& Maglia, G. (2024). Blobs form during the
single-file transport of proteins across nanopores.
Proceedings of the National Academy of
Sciences, 121(38), Article e2405018121. https://doi.org/10.1073/pnas.2405018121
Martínez
Felices, J. M., Barreto, Y. B.,
Thangaratnarajah, C., Whittaker, J. J.,
Alencar, A. M., Guskov, A., & Slotboom, D.
J. (2024). Cobalamin decyanation by the membrane
transporter BtuM. Structure,
32. https://doi.org/10.1016/j.str.2024.04.014
Nemchinova,
M., Schuurman-Wolters, G. K., Whittaker,
J. J., Arkhipova, V., Marrink, S. J.,
Poolman, B., & Guskov, A. (2024).
Exploring the Ligand Binding and Conformational Dynamics of
the Substrate-Binding Domain 1 of the ABC Transporter GlnPQ.
The Journal of Physical Chemistry B,
128(32), 7822-7832. https://doi.org/10.1021/acs.jpcb.4c02662
Lohr,
T., Herbst, C., Bzdyl, N. M., Jenkins, C., Scheuplein, N. J.,
Sugiarto, W. O., Whittaker, J. J., Guskov,
A., Norville, I., Hellmich, U. A., Hausch, F., Sarkar-Tyson,
M., Sotriffer, C., & Holzgrabe, U. (2024). High Affinity
Inhibitors of the Macrophage Infectivity Potentiator Protein from
Trypanosoma cruzi, Burkholderia pseudomallei, and Legionella
pneumophila: A Comparison. ACS Infectious
Diseases, 10(10), 3681–3691. https://doi.org/10.1021/acsinfecdis.4c00553
Lohr,
T., Herbst, C., Bzdyl, N., Jenkins, C., Scheuplein, N., Sugiarto,
W. O., Whittaker, J., Guskov, A.,
Norville, I., Hellmich, U., Hausch, F., Sakar-Tyson, M., Sotriffer,
C., & Holzgrabe, U. (2024). Improvement of Inhibitors
of the Macrophage Infectivity Potentiator Protein from Trypanosoma
cruzi, Burkholderia pseudomallei, and Legionella pneumophila: A
comparison. ChemRxiv. https://doi.org/10.26434/chemrxiv-2024-jk23r
Torres,
S. D. C., Castro-Amarante, M. F., Ferreira, L. C. S., Guskov,
A., & Balan, A. (2024). Successful production
of antibodies against extra cytoplasmic loops of the Mycobacterium
tuberculosis ABC transporter Rv1819c. Preprints. https://doi.org/10.20944/preprints202404.0481.v1
Sauciuc,
A., Whittaker, J., Tadema,
M., Tych, K., Guskov, A.,
& Maglia, G. (2024). Unravelled proteins form
blobs during translocation across nanopores. Manuscript
submitted for publication. https://doi.org/10.1101/2024.01.23.576815
2023
Hameleers,
L., Pijning, T., Gray, B. B., Fauré,
R., & Jurak, E. (2024). Novel
β-galactosidase activity and first crystal structure of
Glycoside Hydrolase family 154. New
Biotechnology, 80, 1-11. https://doi.org/10.1016/j.nbt.2023.12.011
Pijning,
T., Vujičić-Žagar, A., Laan, J.-M. V. D.,
Jong, R. M. D., Ramirez-Palacios, C., Vente, A.,
Edens, L., & Dijkstra, B. W. (2024). Structural and
time-resolved mechanistic investigations of protein hydrolysis by
the acidic proline-specific endoprotease from Aspergillus
niger. Protein Science,
33(1), Article e4856. https://doi.org/10.1002/pro.4856
Marin,
E., Kovalev, K., Poelman, T., Veenstra,
R., Borshchevskiy, V., & Guskov, A. (2024).
Custom Design of a Humidifier Chamber for In Meso
Crystallization. Crystal Growth &
Design, 24(1), 325-330. Article 3c01034. https://doi.org/10.1021/acs.cgd.3c01034
Marin,
E., Kovaleva, M., Kadukova, M., Mustafin, K., Khorn, P.,
Rogachev, A., Mishin, A., Guskov, A., &
Borshchevskiy, V. (2024). Regression-Based Active Learning
for Accessible Acceleration of Ultra-Large Library Docking.
Journal of chemical information and modeling,
64(7), 2612–2623. Article 3c01661. https://doi.org/10.1021/acs.jcim.3c01661
Partipilo,
M., Whittaker, J. J., Pontillo,
N., Coenradij, J., Herrmann,
A., Guskov, A., & Slotboom, D.
J. (2023). Biochemical and structural insight into the
chemical resistance and cofactor specificity of the formate
dehydrogenase from Starkeya novella. The FEBS
Journal, 290(17), 4238-4255. https://doi.org/10.1111/febs.16871
Wiedemann,
C., Whittaker, J. J., Carrillo, V. H. P., Goretzki,
B., Dajka, M., Tebbe, F., Harder, J.-M., Krajczy, P. R., Joseph,
B., Hausch, F., Guskov, A., & Hellmich, U. A.
(2023). Legionella pneumophila macrophage infectivity
potentiator protein appendage domains modulate protein dynamics and
inhibitor binding. International Journal of
Biological Macromolecules, 252, Article
126366. https://doi.org/10.1016/j.ijbiomac.2023.126366
Colucci,
E., Anshari, Z., Patiño-Ruiz,
M., Nemchinova, M., Whittaker,
J., Slotboom, D., & Guskov, A.
(2023). Mutation in glutamate transporter homologue GltTk
provides insights into pathologic mechanism of episodic ataxia
6. Nature Communications, 14,
Article 1799. https://doi.org/10.1038/s41467-023-37503-y
Kolosova
, O., Zgadzay, Y., Stetsenko, A., Atamas,
A., Wu, C.-H., Sachs, M. S., Jenner, L., Guskov,
A., & Yusupov, M. (2023). Structural
characterization of cephaeline binding to the eukaryotic ribosome
using Cryo-Electron Microscopy. Biopolymers and
Cell, 39(4), 265-276. https://doi.org/10.7124/bc.000AA4
Atamas,
A. A., Guskov, A. I., & Rogachev, A. V.
(2023). Structural Study of the Candida auris
Ribosome. Moscow University Biological Sciences
Bulletin, 78(Suppl 1), S56-S58. https://doi.org/10.3103/S0096392523700220
Bikmullin,
A. G., Fatkhullin, B., Stetsenko, A., Gabdulkhakov,
A., Garaeva, N., Nurullina, L., Klochkova, E., Golubev, A.,
Khusainov, I., Trachtmann, N., Blokhin, D., Guskov,
A., Validov, S., Usachev, K., & Yusupov, M. (2023).
Yet Another Similarity between Mitochondrial and Bacterial
Ribosomal Small Subunit Biogenesis Obtained by Structural
Characterization of RbfA from S. aureus.
International Journal of Molecular Sciences,
24(3), Article 24032118. https://doi.org/10.3390/ijms24032118
2022
Meng,
X., Li, X., Pijning, T., Wang, X., van Leeuwen,
S. S., Dijkhuizen, L., Chen, G., & Liu, W.
(2022). Characterization of the (Engineered) Branching
Sucrase GtfZ-CD2 from Apilactobacillus kunkeei for Efficient
Glucosylation of Benzenediol Compounds. Applied
and environmental microbiology, 88(16),
Article e0103122. https://doi.org/10.1128/aem.01031-22
Pijning,
T., Te Poele, E. M., de Leeuw, T. C.,
Guskov, A., & Dijkhuizen, L. (2022).
Crystal Structure of 4,6-α-Glucanotransferase
GtfC-ΔC from Thermophilic Geobacillus 12AMOR1: Starch
Transglycosylation in Non-Permuted GH70 Enzymes.
Journal of Agricultural and Food Chemistry,
70(48), 15283–15295. Article 2c06394. https://doi.org/10.1021/acs.jafc.2c06394
Xu,
W., Ni, D., Hou, X., Pijning, T., Guskov,
A., Rao, Y., & Mu, W. (2022). Crystal Structure of
Levansucrase from the Gram-Negative Bacterium Brenneria Provides
Insights into Its Product Size Specificity.
Journal of Agricultural and Food Chemistry,
70(16), 5095-5105. https://doi.org/10.1021/acs.jafc.2c01225
Zgadzay,
Y., Kolosova , O., Stetsenko, A., Wu, C., Bruchlen,
D., Usachev, K., Validov, S., Jenner, L., Rogachev, A., Yusupova,
G., Sachs, M. S., Guskov, A., & Yusupov, M.
(2022). E-site drug specificity of the human pathogen Candida
albicans ribosome. Science Advances,
8(21), Article eabn1062. https://doi.org/10.1126/sciadv.abn1062
2021
Li,
X., Meng, X., de Leeuw, T. C., Te Poele, E. M.,
Pijning, T., Dijkhuizen, L., & Liu, W.
(2023). Enzymatic glucosylation of polyphenols using
glucansucrases and branching sucrases of glycoside hydrolase family
70. Critical Reviews in Food Science and
Nutrition, 63(21), 5247–5267. Article
2016598. https://doi.org/10.1080/10408398.2021.2016598
Jiang,
Y., Li, X., Pijning, T., Bai, Y., &
Dijkhuizen, L. (2022). Mutations in Amino Acid
Residues of Limosilactobacillus reuteri 121 GtfB
4,6-α-Glucanotransferase that Affect Reaction and Product
Specificity. Journal of Agricultural and Food
Chemistry, 70(6), 1952-1961. Article 1c07618.
https://doi.org/10.1021/acs.jafc.1c07618
Ghauri,
K., Pijning, T., Munawar, N., Ali, H., Ghauri, M. A.,
Anwar, M. A., & Wallis, R. (2021). Crystal structure of
an inulosucrase from Halalkalicoccus jeotgali B3T-a halophilic
archaeal strain. The FEBS Journal,
288(19), 5723-5736. https://doi.org/10.1111/febs.15843
Pijning,
T., Gangoiti, J., Te Poele, E. M.,
Börner, T., & Dijkhuizen, L. (2021).
Insights into Broad-Specificity Starch Modification from the
Crystal Structure of Limosilactobacillus Reuteri NCC 2613
4,6-α-Glucanotransferase GtfB. Journal of
Agricultural and Food Chemistry, 69(44),
13235-13245. Article 05657. https://doi.org/10.1021/acs.jafc.1c05657
Semchonok,
D. A., Mondal, J., Cooper, C. J., Schlum, K., Li, M., Amin,
M., Sorzano, C. O. S., Ramírez-Aportela, E., Kastritis,
P. L., Boekema, E. J., Guskov, A., & Bruce, B. D.
(2022). Cryo-EM structure of a tetrameric photosystem I from
Chroococcidiopsis TS-821, a thermophilic, unicellular,
non-heterocyst-forming cyanobacterium. Plant
Communications, 3(1), Article 100248. https://doi.org/10.1016/j.xplc.2021.100248
Stehantsev,
P., Stetsenko, A., Nemchinova, M.,
Aduri, N. G., Marrink, S., Gati, C., &
Guskov, A. (2021). A structural view onto
disease-linked mutations in the human neutral amino acid exchanger
ASCT1. Computational and Structural Biotechnology
Journal, 19, 5246-5254. https://doi.org/10.1016/j.csbj.2021.09.015
Nemchinova,
M., Melcr, J., Wassenaar,
T., Marrink, S., & Guskov, A.
(2021). Asymmetric CorA Gating Mechanism as Observed by
Molecular Dynamics Simulations. Journal of
chemical information and modeling, 61(5),
2407-2417. https://doi.org/10.1021/acs.jcim.1c00261
Volkova,
M., Atamas, A., Tsarenko, A., Rogachev, A., & Guskov,
A. (2021). Cation Transporters of Candida
albicans—New Targets to Fight Candidiasis?
Biomolecules, 11(4), Article 584. https://doi.org/10.3390/biom11040584
Trinco,
G., Arkhipova, V., Garaeva, A., Hutter, C. A.
J., Seeger, M. A., Guskov, A., & Slotboom,
D. (2021). Kinetic mechanism of Na+-coupled aspartate
transport catalyzed by GltTk. Communications
biology, 4, Article 751. https://doi.org/10.1038/s42003-021-02267-y
Stetsenko,
A., Stehantsev, P., Dranenko, N. O., Gelfand,
M. S., & Guskov, A. (2021). Structural and
biochemical characterization of a novel ZntB (CmaX) transporter
protein from Pseudomonas aeruginosa. International
Journal of Biological Macromolecules, 184,
760-767. https://doi.org/10.1016/j.ijbiomac.2021.06.130
Plötz,
E., Schuurman-Wolters, G., Zijlstra, N., Jager, A.,
Griffith, D., Guskov, A., Gouridis, G., Poolman,
B., & Cordes, T. (2021). Structural
and biophysical characterization of the tandem substrate-binding
domains of the ABC importer GlnPQ. Open
Biology, 11(4), Article 200406. https://doi.org/10.1098/rsob.200406
Arkhipova,
V., Fu, H., Hoorens, M., Trinco,
G., Lameijer, L., Marin, E., Feringa, B.
L., Poelarends, G., Szymanski,
W., Slotboom, D., & Guskov, A.
(2021). Structural Aspects of Photopharmacology: Insight into
the Binding of Photoswitchable and Photocaged Inhibitors to the
Glutamate Transporter Homologue. Journal of the
American Chemical Society, 143(3), 1513-1520.
https://doi.org/10.1021/jacs.0c11336
2020
Guo,
C., Ni, Y., Biewenga, L., Pijning, T.,
Thunnissen, A.-M. W. H., & Poelarends, G.
J. (2021). Using Mutability Landscapes To Guide Enzyme
Thermostabilization. ChemBioChem,
22(1), 170-175. https://doi.org/10.1002/cbic.202000442
Rempel,
S., Gati, C., Nijland, M., Thangaratnarajah,
C., Karyolaimos, A., Gier, J.-W. L. D., Guskov,
A., & Slotboom, D. (2020). A
mycobacterial ABC transporter mediates the uptake of hydrophilic
compounds. Nature, 580(7803),
409-412. https://doi.org/10.1038/s41586-020-2072-8
Stetsenko,
A., & Guskov, A. (2020). Cation
permeability in CorA family of proteins.
Scientific Reports, 10(1), Article
840. https://doi.org/10.1038/s41598-020-57869-z
Skitchenko,
R. K., Usoltsev, D., Uspenskaya, M., Kajava, A. V., &
Guskov, A. (2020). Census of halide-binding sites in
protein structures. Bioinformatics (Oxford,
England), 36(10), 3064-3071. https://doi.org/10.1093/bioinformatics/btaa079
Setyawati,
I., Stanek, W. K., Dosz-Majsnerowska, M., Ziel-Swier,
L., Pardon, E., Steyaert, J., Guskov, A.,
& Slotboom, D. (2020). In vitro reconstitution of
dynamically interacting integral membrane subunits of
energy-coupling factor transporters.
eLife, 9, 1-21. Article e64389. https://doi.org/10.7554/eLife.64389
Faustino,
I., Abdizadeh, H., Souza, P. C.
T., Jeucken, A., Stanek, W. K., Guskov,
A., Slotboom, D., & Marrink,
S. (2020). Membrane mediated toppling mechanism of the
folate energy coupling factor transporter. Nature
Communications, 11(1), Article 1763. https://doi.org/10.1038/s41467-020-15554-9
Stetsenko,
A., Singh, R., Jähme, M., Guskov,
A., & Slotboom, D. (2020). Structural
and Functional Characterization of NadR from Lactococcus
lactis. Molecules, 25(8),
Article 1940. https://doi.org/10.3390/molecules25081940
Arkhipova,
V., Guskov, A., & Slotboom, D.
(2020). Structural ensemble of a glutamate transporter
homologue in lipid nanodisc environment. Nature
Communications, 11(1), Article 998. https://doi.org/10.1038/s41467-020-14834-8
Dubach,
V. R. A., & Guskov, A. (2020). The
Resolution in X-ray Crystallography and Single-Particle Cryogenic
Electron Microscopy. Crystals,
10(7), 1-13. Article 580. https://doi.org/10.3390/cryst10070580
2019
Biewenga,
L., Thangavelu, S., Kunzendorf, A., Van
Der Meer, J., Pijning, T., Tepper,
P., Van Merkerk, R., Charnock, S. J.,
Thunnissen, A. W. H., & Poelarends, G. J.
(2019). Enantioselective Synthesis of Pharmaceutically Active
γ-Aminobutyric Acids Using a Tailor-Made Artificial Michaelase
in One-Pot Cascade Reactions. ACS
Catalysis, 9, 1503-1513. https://doi.org/10.1021/acscatal.8b04299
Zhang,
X., Leemhuis, R., Janecek, S., Martinovicova,
M., Pijning, T., & van der Maarel, M.
(2019). Identification of Thermotoga maritima MSB8 GH57
α-amylase AmyC as a glycogen-branching enzyme with high
hydrolytic activity. Applied Microbiology and
Biotechnology, 103(15), 6141–6151. https://doi.org/10.1007/s00253-019-09938-1
Leth,
M. L., Ejby, M., Madland, E., Kitaoku, Y., Slotboom, D.
J., Guskov, A., Aachmann, F. L., & Abou
Hachem, M. (2020). Molecular insight into a new low affinity
xylan binding module from the xylanolytic gut symbiont Roseburia
intestinalis. The FEBS Journal,
287(10), 2105-2117. https://doi.org/10.1111/febs.15117
Garaeva,
A. A., Guskov, A., Slotboom, D.
J., & Paulino, C. (2019). A one-gate
elevator mechanism for the human neutral amino acid transporter
ASCT2. Nature Communications,
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Arkhipova,
V. I., Trinco, G., Thijs, E., Jensen, S.,
Slotboom, D., & Guskov, A. (2019).
Binding and transport of D-aspartate by the glutamate
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8, Article e45286. https://doi.org/10.7554/eLife.45286
Ejby,
M., Guskov, A., Pichler, M. J., Zanten, G. C., Schoof,
E., Saburi, W., Slotboom, D. J., & Abou Hachem, M.
(2019). Two binding proteins of the ABC transporter that
confers growth of Bifidobacterium animalis subsp. lactis ATCC27673
on β-mannan possess distinct manno-oligosaccharide binding
profiles. Molecular Microbiology,
112(1), 114-130. Article 14257. https://doi.org/10.1111/mmi.14257
2018
Zhang,
F., Liu, H., Zhang, T., Pijning, T., Yu, L., Zhang,
W., Liu, W., & Meng, X. (2018). Biochemical and genetic
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X., Gangoiti, J., Wang, X., Grijpstra, P., van
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a GH70 protein from Lactobacillus kunkeei DSM 12361 with two
catalytic domains involving branching sucrase activity.
Applied Microbiology and Biotechnology,
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Meng,
X., Gangoiti, J., de Kok, N., van
Leeuwen, S. S., Pijning, T., &
Dijkhuizen, L. (2018). Biochemical characterization of
two GH70 family 4,6-α-glucanotransferases with distinct
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Pham,
H., Pijning, T., Dijkhuizen, L.,
& van Leeuwen, S. S. (2018). Mutational Analysis
of the Role of the Glucansucrase Gtf180-Delta N Active Site
Residues in Product and Linkage Specificity with Lactose as
Acceptor Substrate. Journal of Agricultural and
Food Chemistry, 66(47), 12544-12554. Article
acs.jafc.8b04486. https://doi.org/10.1021/acs.jafc.8b04486
Garaeva,
A., Oostergetel, G., Gati, C., Guskov,
A., Batista Paulino, C., & Slotboom,
D. (2018). Cryo-EM structure of the human neutral
amino acid transporter ASCT2. Nature Structural
& Molecular Biology, 25, 515-521. https://doi.org/10.1038/s41594-018-0076-y
Rempel,
S., Colucci, E., Gier, J.-W. D., Guskov,
A., & Slotboom, D. (2018).
Cysteine-mediated decyanation of vitamin B12 by the predicted
membrane transporter BtuM. Nature
Communications, 9(1), Article 3038. https://doi.org/10.1038/s41467-018-05441-9
Luís
da Silva Santos Guimarães, J. A., Rempel, S., Mous, S. T. M.,
Tambascia Pereira, C., ter Beek, J., Gier, J.-W. D., Guskov,
A., & Slotboom, D. (2018). Functional
and structural characterization of an ECF-type ABC transporter for
vitamin B12. eLife, 7,
Article e35828. https://doi.org/10.7554/eLife.35828
2017
Gangoiti,
J., Pijning, T., & Dijkhuizen,
L. (2018). Biotechnological potential of novel
glycoside hydrolase family 70 enzymes synthesizing α-glucans
from starch and sucrose. Biotechnology
Advances, 36, 196-207. https://doi.org/10.1016/j.biotechadv.2017.11.001
Gangoiti
Muñecas, J., van Leeuwen, S. S.,
Gerwig, G. J., Duboux, S., Vafiadi, C., Pijning,
T., & Dijkhuizen, L. (2017).
4,3-α-Glucanotransferase, a novel reaction specificity
in glycoside hydrolase family 70 and clan GH-H.
Scientific Reports, 7, 1-15. Article
39761. https://doi.org/10.1038/srep39761
Franken,
L., Oostergetel, G., Pijning, T., Puri, P., Arkhipova,
V. I., Boekema, E., Poolman, B., & Guskov,
A. (2017). A general mechanism of ribosome
dimerization revealed by single-particle cryo-electron
microscopy. Nature Communications,
8, Article 722. https://doi.org/10.1038/s41467-017-00718-x
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