Theses

Person	Year	Title
Juliana Vilacha Madeira R Santos	2023	Mapping the Kinase Mutation Landscape - A Computational Exploration
Melanie König	2023	From Lipid to Life
Petteri Vainikka	2023	Coarse-grained molecular dynamics of molecular machines and deep eutectic solvents
Fabian Grünewald	2023	Material Design using Martini
Maria Tsanai	2022	Modeling of liquid-liquid phase separation in biological systems
Carlos Ramirez Palacios	2022	Numerical simulations of proteins
Bart Bruininks	2021	On the road to simulating life with molecular detail
Yang Liu	2020	Multiscale membrane models
Peter Kroon	2020	Aggregate, assemble, automate
Ilias Patmanidis	2020	Molecular Dynamics of Bioinspired Nanotubes
Riccardo Alessandri	2019	Multiscale modeling of organic materials. From the Morphology Up
Juanjuan Su	2017	The simulation studies of the interplay of peptides with lipids
Jaakko Uusitalo	2016	Covering all the bases
Floris van Eerden	2016	Photosynthesis in silico
Clement Arnarez	2014	Computational Microscopy of the supramolecular organisation of the respitory chain complexes
Nur Alia Oktaviani	2014	NMR studies of folded and unfolded proteins : method developments and biological insight
Djurre de Jong	2013	A molecular view on the organizational complexity of proteins in membranes
César López Bautista	2012	Carbohydrates: More than meets the eye
Andrzej Rzepiela	2011	Development of multiscale simulation methods
Renee Otten	2011	Protein structure and dynamics by NMR: synergy between biochemistry and pulse sequence design
Marcelo Masman	2010	Development of novel small-size peptides as putative therapeutic drugs
Marc Fuhrmans	2010	Simulation studies of membrane fusion and the role of fusion peptides
Daniela Mueller	2010	The effects of urea and of pH on protein structure studies by molecular dynamics simulation
Ying Xue	2010	The effect of environment on peptide and protein folding: a molecular dynamics study
Jelger Risselada	2009	Fascinating vesicles?
Magdalena Siwko	2008	Disturb or Stabilize? Effects of different molecules on biological membranes
Tsjerk Wassenaar	2006	Molecular Dynamics of Sense and Sensibility in Processing and Analysis of Data
Hao Fan	2006	Refining protein structures: a dynamic approach
Hari Leontiadou	2005	Modelling membranes under stress
Gilles Pieffet	2005	The application of molecular dynamics simulation techniques and free energy calculations to predict protein-protein and protein-ligand interactions
Gerrit Groenhof	2005	Understanding light-induced conformational changes in molecular systems from first principles
Patricia Soto-Becerra	2004	Peptide folding in non-aqueous environments investigated with molecular dynamics simulations: possibilities and limitations
Franciska van Lune	2004	Residual dipolar couplings: a new technique for structure determination of proteins in solution
Berk Hess	2002	Stochastic concepts in molecular simulation
Eiso AB	2002	Structural studies on IIB
Alexander Morozov	2002	Orientational transitions in block-copolymer melts under shear flow
Marc Lensink	2002	Non-adiabatic proton transfer in biomolecular systems
Anton Feenstra	2002	Long term dynamics of proteins and peptides
Marcel Swart	2002	Density Functional Theory Applied to Copper Proteins
Lucia Creveld	2001	Molecular dynamics simulations in rational protein design: stabilisation of Fusarium solani pisi cudinase against anionic surfactants
Pieter Meulenhoff	1999	Interfacial action of phospholipase A _2:A molecular dynamics study.
Bert de Groot	1999	Native State Protein Dynamics, a theoretical approach
Peter Tieleman	1998	Theoretical studies of membrane models: Molecular dynamics of water, lipids and membrane proteins
Bernard van Vlimmeren	1998	Mesoscopic dynamics, simulation of microphase separation dynamics in polymer liquids
Andrea Amadei	1998	Theoretical models for fluid thermodynamics based on the quasi-Gaussian entropy theory
Ton Linssen	1998	Molecular dynamics simulations of haloalkane dehalogenase
Natalia Maurits	1998	Mathematical modeling of complex systems, microphase separation dynamics in polymer liquids
Emile Apol	1997	The quasi-gaussian entropy theory, temperature dependence of thermodynamic properties using distribution functions
David van der Spoel	1996	Structure and dynamics of peptides: Theoretical aspects of protein folding
Henk Bekker	1996	Molecular dynamics simulation methods revised
Alex de Vries	1995	Modelling condensed-phase systems : from quantum chemistry to molecular models (PDF)
Siewert Jan Marrink	1994	Permeation of small molecules across lipid membranes. A molecular dynamics study.

Last modified:

26 April 2024 3.05 p.m.