Publications
2024
Bustamante,
M., Koopman, F., Martens, J., Brons, J.
K., DelaFuente, J., Hackl, T., Kuipers,
O. P., van Doorn, G. S., & de Vos, M.
G. J. (2024). Community context influences the
conjugation efficiency of Escherichia coli.
FEMS Microbes, 5, Article xtae023.
https://doi.org/10.1093/femsmc/xtae023
2022
Bustamante
Ordonez, M., van Doorn, S., Weissing,
F., Daras, I., Kuipers, O.,
& de Vos, M. (2022). Eco-evolutionary
interactions and the spread of antimicrobial resistance in
pathogenic microbial communities. Poster session
presented at Netherlands Society for Evolutionary Biology Meeting
2022, Ede, Netherlands.
Zandbergen,
L., van den Heuvel, J., Zwaan, B., de Visser, A.,
& de Vos, M. (2022). Eco-evolutionary
interactions in polymicrobial infections. Poster
session presented at Netherlands Society for Evolutionary Biology
Meeting 2022, Ede, Netherlands.
Dabral,
D., Ghosh, H., Niwa, M., Hirayama, T., de
Vos, M., & van den Bogaart, G. (2022).
Iron regulates contrasting toxicity of uropathogenic
Eschericia coli in macrophages and epithelial
cells. (BioRxiv). BioRxiv. https://doi.org/10.1101/2022.05.29.493834
Melkonian,
C., Seidl, M. F., van der Hooft, J. J. J., & de Vos, M.
G. J. (2022). Metabolic interactions shape a
community's phenotype. Trends in
Microbiology, 30(7), 609-611. https://doi.org/10.1016/j.tim.2022.05.001
2021
Zandbergen,
L., Brons, J., Halverson, T., Wolfe, A.
J., & de Vos, M. (2021). The good and the
bad: Ecological interaction measurements between the urinary
microbiota and uropathogens. Frontiers in
Microbiology, 12, Article 659450. https://doi.org/10.3389/fmicb.2021.659450
Lara,
E. G., van der Windt, I., Molenaar, D., de Vos, M. G.
J., & Melkonian, C. (2021). Using functional
annotations to study pairwise interactions in urinary tract
infection communities. Genes,
12(8), Article 1221. https://doi.org/10.3390/genes12081221
2020
Campos,
A. C. C., Andrade, N. L., Couto, N., Mutters,
N. T., de Vos, M., Rosa, A. C. P., Damasco, P.
V., Foe, J. R. L. T., Friedrich, A.
W., Flissikowska, M. A. C., & Rossen,
J. W. A. (2020). Characterization of fosfomycin
heteroresistance among multidrug-resistant Escherichia coli
isolates from hospitalized patients in Rio de Janeiro,
Brazil. Journal of Global Antimicrobial
Resistance, 22, 584-593. https://doi.org/10.1016/j.jgar.2020.04.026
Brons,
J., Vink, S. N., de Vos, M.,
Reuter, S., Dobrindt, U., & van Elsas, J. D.
(2020). Fast identification of Escherichia coli in
urinary tract infections using a virulence gene based PCR approach
in a novel thermal cycler. Journal of
microbiological methods, 169, Article 105799.
https://doi.org/10.1016/j.mimet.2019.105799
Zandbergen,
L., & de Vos, M. (2020).
Polymicrobiële infecties: Invloeden van de ecologische
gemeenschap op het verloop van infecties.
Tijdschrift voor Infectieziekten,
15(6), 221-226. https://www.ariez.nl/wp-content/uploads/2020/12/TvI6_2020_art_Zandbergen.pdf
Nghe,
P., de Vos, M., Kingma, E., Kogenaru, M., Poelwijk, F.
J., Laan, L., & Tans, S. J. (2020). Predicting evolution
using regulatory architecture. Annual Review of
Biophysics, 49, 181–197. Article 49. https://doi.org/10.1146/annurev-biophys-070317-032939
2019
Andersen,
S. B., Shapiro, B. J., Vandenbroucke-Grauls, C., & de
Vos, M. G. J. (2019). Microbial evolutionary medicine:
From theory to clinical practice. Lancet
Infectious Diseases, 19(8), e273-e283. https://doi.org/10.1016/S1473-3099(19)30045-3
Zandbergen,
L. (2019). Pathogen and non-pathogen interactions
in urinary tract infections. Poster session presented
at Netherlands Annual Ecology Meeting 2019, Lunteren,
Netherlands.
2018
de
Vos, M. G. J., Schoustra, S. E., & de Visser, J. A. G.
M. (2018). Ecology dictates evolution? About the importance
of genetic and ecological constraints in adaptation.
EPL, 122(5), Article 58002. https://doi.org/10.1209/0295-5075/122/58002
de
Vos, M. G. J., de Visser, J. A. G. M., Rossen, J. W.
A., & Zwaan, B. J. (2018). Polymicrobiële
infecties: Ecosystemen met bijzondere eigenschappen.
Nederlands Tijdschrift voor Geneeskunde,
162, Article D2224. https://www.ntvg.nl/artikelen/polymicrobiele-infecties-ecosystemen-met-bijzondere-eigenschappen
2017
de
Vos, M. G. J., Zagorski, M., McNally, A., & Bollenbach,
T. (2017). Interaction networks, ecological stability, and
collective antibiotic tolerance in polymicrobial infections.
Proceedings of the National Academy of Sciences of the
United States of America, 114(40),
10666-10671. https://doi.org/10.1073/pnas.1713372114
2015
de
Vos, M. G. J., Dawid, A., Sunderlikova, V., & Tans, S.
J. (2015). Breaking evolutionary constraint with a tradeoff
ratchet. Proceedings of the National Academy of
Sciences of the United States of America,
112(48), 14906-14911. https://doi.org/10.1073/pnas.1510282112
2014
de
Vos, M. G. J., & Bollenbach, T. (2014).
Suppressive drug interactions between antifungals.
Chemistry & Biology, 21(4),
439-440. https://doi.org/10.1016/j.chembiol.2014.04.004
2013
de
Vos, M. G. J., Poelwijk, F. J., Battich, N., Ndika, J. D.
T., & Tans, S. J. (2013). Environmental dependence of
genetic constraint. PLoS genetics,
9(6), Article 1003580. https://doi.org/10.1371/journal.pgen.1003580
de
Vos, M. G. J., Poelwijk, F. J., & Tans, S. J. (2013).
Optimality in evolution: New insights from synthetic
biology. Current Opinion in
Biotechnology, 24(4), 797-802. https://doi.org/10.1016/j.copbio.2013.04.008
2011
Poelwijk,
F. J., Heyning, P. D., de Vos, M. G. J., Kiviet, D.
J., & Tans, S. J. (2011). Optimality and evolution of
transcriptionally regulated gene expression. BMC
Systems Biology, 5, Article 128. https://doi.org/10.1186/1752-0509-5-128
Poelwijk,
F. J., de Vos, M. G. J., & Tans, S. J. (2011).
Tradeoffs and optimality in the evolution of gene
regulation. Cell, 146(3),
462-470. https://doi.org/10.1016/j.cell.2011.06.035
2010
Dawid,
A., Kiviet, D. J., Kogenaru, M., de Vos, M., &
Tans, S. J. (2010). Multiple peaks and reciprocal sign
epistasis in an empirically determined genotype-phenotype
landscape. Chaos, 20(2),
Article 026105. https://doi.org/10.1063/1.3453602
2009
Kogenaru,
M., de Vos, M. G. J., & Tans, S. J. (2009).
Revealing evolutionary pathways by fitness landscape
reconstruction. Critical reviews in biochemistry
and molecular biology, 44(4), 169-174. https://doi.org/10.1080/10409230903039658
2008
Coelho,
M. R. R., de Vos, M., Carneiro, N. P., Marriel, I. E.,
Paiva, E., & Seldin, L. (2008). Diversity of nifH
gene pools in the rhizosphere of two cultivars of sorghum
(Sorghum bicolor) treated with contrasting levels of
nitrogen fertilizer. FEMS Microbiology
Letters, 279(1), 15-22. https://doi.org/10.1111/j.1574-6968.2007.00975.x
2006
Brouns,
S. J. J., Walther, J., Snijders, A. P. L., de Werken, H. J. G. V.,
Willemen, H. L. D. M., Worm, P., de Vos, M. G. J.,
Andersson, A., Lundgren, M., Mazon, H. F. M., van den Heuvel, R. H.
H., Nilsson, P., Salmon, L., de Vos, W. M., Wright, P. C.,
Bernander, R., & van der Oost, J. (2006). Identification
of the missing links in prokaryotic pentose oxidation pathways:
Evidence for enzyme recruitment. Journal of
Biological Chemistry, 281(37), 27378-27388. https://doi.org/10.1074/jbc.M605549200
Snijders,
A. P. L., Walther, J., Peter, S., Kinnman, I., de Vos, M. G.
J., van de Werken, H. J. G., Brouns, S. J. J., van der Oost,
J., & Wright, P. C. (2006). Reconstruction of central
carbon metabolism in Sulfolobus solfataricus using a
two-dimensional gel electrophoresis map, stable isotope labelling
and DNA microarray analysis.
Proteomics, 6(5), 1518-1529. https://doi.org/10.1002/pmic.200402070
2005
Snijders,
A. P. L., de Vos, M. G. J., de Koning, B., &
Wright, P. C. (2005). A fast method for quantitative
proteomics based on a combination between two-dimensional
electrophoresis and 15N-metabolic labelling.
Electrophoresis, 26(16), 3191-3199.
https://doi.org/10.1002/elps.200500218
Snijders,
A. P. L., de Vos, M. G. J., & Wright, P. C.
(2005). Novel approach for peptide quantitation and
sequencing based on 15N and 13C metabolic
labeling. Journal of Proteome
Research, 4(2), 578-585. https://doi.org/10.1021/pr0497733
| Last modified: | 09 June 2023 8.36 p.m. |